Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
VSX2P58304 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
VSX2P58304 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.56■□□□□ 0.56
VSX2P58304 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 AL445675.2-201ENST00000620291 557 ntBASIC18.56■□□□□ 0.56
VSX2P58304 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.56■□□□□ 0.56
VSX2P58304 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.56■□□□□ 0.56
VSX2P58304 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.56■□□□□ 0.56
VSX2P58304 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VSX2P58304 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VSX2P58304 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.55■□□□□ 0.56
VSX2P58304 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.55■□□□□ 0.56
VSX2P58304 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.55■□□□□ 0.56
VSX2P58304 AP003071.4-201ENST00000562276 1284 ntBASIC18.55■□□□□ 0.56
VSX2P58304 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX2P58304 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.55■□□□□ 0.56
VSX2P58304 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX2P58304 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.54■□□□□ 0.56
VSX2P58304 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.54■□□□□ 0.56
VSX2P58304 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.54■□□□□ 0.56
VSX2P58304 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.54■□□□□ 0.56
VSX2P58304 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.54■□□□□ 0.56
VSX2P58304 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
VSX2P58304 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.54■□□□□ 0.56
VSX2P58304 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.54■□□□□ 0.56
VSX2P58304 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VSX2P58304 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.54■□□□□ 0.56
VSX2P58304 NUDT16P1-203ENST00000513809 620 ntBASIC18.54■□□□□ 0.56
VSX2P58304 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.54■□□□□ 0.56
VSX2P58304 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.54■□□□□ 0.56
VSX2P58304 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VSX2P58304 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.54■□□□□ 0.56
VSX2P58304 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.54■□□□□ 0.56
VSX2P58304 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.54■□□□□ 0.56
VSX2P58304 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX2P58304 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VSX2P58304 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.53■□□□□ 0.56
VSX2P58304 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.53■□□□□ 0.56
VSX2P58304 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.53■□□□□ 0.56
VSX2P58304 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.53■□□□□ 0.56
VSX2P58304 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VSX2P58304 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.53■□□□□ 0.56
VSX2P58304 AC131212.4-201ENST00000623606 975 ntBASIC18.53■□□□□ 0.56
VSX2P58304 AL031985.4-201ENST00000642138 673 ntBASIC18.53■□□□□ 0.56
VSX2P58304 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VSX2P58304 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.53■□□□□ 0.56
VSX2P58304 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VSX2P58304 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
VSX2P58304 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VSX2P58304 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.52■□□□□ 0.56
VSX2P58304 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
VSX2P58304 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VSX2P58304 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VSX2P58304 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VSX2P58304 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms