Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LHX1P48742 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LHX1P48742 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LHX1P48742 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LHX1P48742 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.57■□□□□ 0.88
LHX1P48742 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LHX1P48742 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
LHX1P48742 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LHX1P48742 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LHX1P48742 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.57■□□□□ 0.88
LHX1P48742 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.57■□□□□ 0.88
LHX1P48742 FAM207BP-201ENST00000447172 505 ntBASIC20.57■□□□□ 0.88
LHX1P48742 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LHX1P48742 AC091390.4-202ENST00000476426 537 ntBASIC20.57■□□□□ 0.88
LHX1P48742 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.57■□□□□ 0.88
LHX1P48742 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.57■□□□□ 0.88
LHX1P48742 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.57■□□□□ 0.88
LHX1P48742 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.57■□□□□ 0.88
LHX1P48742 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.57■□□□□ 0.88
LHX1P48742 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
LHX1P48742 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LHX1P48742 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.57■□□□□ 0.88
LHX1P48742 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.57■□□□□ 0.88
LHX1P48742 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
LHX1P48742 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LHX1P48742 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LHX1P48742 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
LHX1P48742 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.57■□□□□ 0.88
LHX1P48742 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.56■□□□□ 0.88
LHX1P48742 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.56■□□□□ 0.88
LHX1P48742 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.56■□□□□ 0.88
LHX1P48742 ZNF815P-204ENST00000434898 1737 ntBASIC20.56■□□□□ 0.88
LHX1P48742 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 AC008040.2-201ENST00000461049 708 ntBASIC20.56■□□□□ 0.88
LHX1P48742 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.56■□□□□ 0.88
LHX1P48742 AC097488.1-201ENST00000507834 756 ntBASIC20.56■□□□□ 0.88
LHX1P48742 AP005242.2-201ENST00000580065 1175 ntBASIC20.56■□□□□ 0.88
LHX1P48742 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.56■□□□□ 0.88
LHX1P48742 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.56■□□□□ 0.88
LHX1P48742 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LHX1P48742 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.55■□□□□ 0.88
LHX1P48742 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.55■□□□□ 0.88
LHX1P48742 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LHX1P48742 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LHX1P48742 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LHX1P48742 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LHX1P48742 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LHX1P48742 AC104417.2-201ENST00000562989 1793 ntBASIC20.55■□□□□ 0.88
LHX1P48742 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LHX1P48742 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LHX1P48742 LINC01023-201ENST00000606054 436 ntBASIC20.55■□□□□ 0.88
LHX1P48742 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.55■□□□□ 0.88
LHX1P48742 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.55■□□□□ 0.88
LHX1P48742 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LHX1P48742 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LHX1P48742 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.54■□□□□ 0.88
LHX1P48742 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.54■□□□□ 0.88
LHX1P48742 KRT8P41-201ENST00000533985 1514 ntBASIC20.54■□□□□ 0.88
LHX1P48742 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
LHX1P48742 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LHX1P48742 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.54■□□□□ 0.88
LHX1P48742 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LHX1P48742 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.54■□□□□ 0.88
LHX1P48742 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LHX1P48742 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LHX1P48742 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LHX1P48742 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LHX1P48742 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.54■□□□□ 0.88
LHX1P48742 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
LHX1P48742 AC133561.5-201ENST00000635547 218 ntBASIC20.54■□□□□ 0.88
LHX1P48742 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LHX1P48742 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.54■□□□□ 0.88
LHX1P48742 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
LHX1P48742 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LHX1P48742 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
LHX1P48742 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.54■□□□□ 0.88
LHX1P48742 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
LHX1P48742 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.54■□□□□ 0.88
LHX1P48742 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.53■□□□□ 0.88
LHX1P48742 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
LHX1P48742 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 PCDHAC2-203ENST00000615316 3011 ntBASIC20.53■□□□□ 0.88
LHX1P48742 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.53■□□□□ 0.88
LHX1P48742 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 AL390955.1-201ENST00000428694 934 ntBASIC20.53■□□□□ 0.88
LHX1P48742 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.53■□□□□ 0.88
LHX1P48742 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.53■□□□□ 0.88
LHX1P48742 SLC25A1P4-201ENST00000567977 778 ntBASIC20.53■□□□□ 0.88
LHX1P48742 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.53■□□□□ 0.88
LHX1P48742 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms