Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SDC1P18827 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SDC1P18827 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC1P18827 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.47■□□□□ 0.55
SDC1P18827 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC1P18827 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SDC1P18827 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC1P18827 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
SDC1P18827 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SDC1P18827 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SDC1P18827 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.46■□□□□ 0.55
SDC1P18827 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.46■□□□□ 0.55
SDC1P18827 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SDC1P18827 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SDC1P18827 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SDC1P18827 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
SDC1P18827 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
SDC1P18827 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.46■□□□□ 0.55
SDC1P18827 KRT18P16-201ENST00000510337 1294 ntBASIC18.46■□□□□ 0.55
SDC1P18827 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.46■□□□□ 0.55
SDC1P18827 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.46■□□□□ 0.55
SDC1P18827 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.46■□□□□ 0.55
SDC1P18827 AC142086.2-201ENST00000569753 217 ntBASIC18.46■□□□□ 0.55
SDC1P18827 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.46■□□□□ 0.55
SDC1P18827 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.46■□□□□ 0.55
SDC1P18827 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.46■□□□□ 0.55
SDC1P18827 AC008687.6-201ENST00000596318 630 ntBASIC18.46■□□□□ 0.55
SDC1P18827 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.46■□□□□ 0.55
SDC1P18827 AC104771.1-201ENST00000603335 964 ntBASIC18.46■□□□□ 0.55
SDC1P18827 AC092666.2-201ENST00000613287 246 ntBASIC18.46■□□□□ 0.55
SDC1P18827 AL121829.2-201ENST00000620908 328 ntBASIC18.46■□□□□ 0.55
SDC1P18827 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SDC1P18827 AC133041.1-202ENST00000642053 222 ntBASIC18.46■□□□□ 0.55
SDC1P18827 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.46■□□□□ 0.55
SDC1P18827 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.46■□□□□ 0.55
SDC1P18827 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC1P18827 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SDC1P18827 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.54
SDC1P18827 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.46■□□□□ 0.54
SDC1P18827 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SDC1P18827 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SDC1P18827 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SDC1P18827 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SDC1P18827 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.45■□□□□ 0.54
SDC1P18827 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.45■□□□□ 0.54
SDC1P18827 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SDC1P18827 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.45■□□□□ 0.54
SDC1P18827 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SDC1P18827 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SDC1P18827 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
SDC1P18827 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.45■□□□□ 0.54
SDC1P18827 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SDC1P18827 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.45■□□□□ 0.54
SDC1P18827 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.44■□□□□ 0.54
SDC1P18827 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.44■□□□□ 0.54
SDC1P18827 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
SDC1P18827 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.44■□□□□ 0.54
SDC1P18827 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.44■□□□□ 0.54
SDC1P18827 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.44■□□□□ 0.54
SDC1P18827 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.44■□□□□ 0.54
SDC1P18827 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.44■□□□□ 0.54
SDC1P18827 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.44■□□□□ 0.54
SDC1P18827 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.44■□□□□ 0.54
SDC1P18827 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.44■□□□□ 0.54
SDC1P18827 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SDC1P18827 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.44■□□□□ 0.54
SDC1P18827 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SDC1P18827 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.44■□□□□ 0.54
SDC1P18827 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SDC1P18827 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SDC1P18827 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SDC1P18827 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
SDC1P18827 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SDC1P18827 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SDC1P18827 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.43■□□□□ 0.54
SDC1P18827 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms