Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A1P02462 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC23.79■■□□□ 1.4
COL4A1P02462 CLN6-204ENST00000564752 900 ntTSL 3 BASIC23.79■■□□□ 1.4
COL4A1P02462 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A1P02462 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A1P02462 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC23.79■■□□□ 1.4
COL4A1P02462 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A1P02462 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC23.79■■□□□ 1.4
COL4A1P02462 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A1P02462 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A1P02462 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A1P02462 SPDYE13P-201ENST00000445314 798 ntBASIC23.79■■□□□ 1.4
COL4A1P02462 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A1P02462 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A1P02462 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC23.79■■□□□ 1.4
COL4A1P02462 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
COL4A1P02462 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A1P02462 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A1P02462 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
COL4A1P02462 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
COL4A1P02462 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.78■■□□□ 1.4
COL4A1P02462 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC23.78■■□□□ 1.4
COL4A1P02462 SPDYE15P-201ENST00000424157 909 ntBASIC23.78■■□□□ 1.4
COL4A1P02462 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC23.78■■□□□ 1.4
COL4A1P02462 AC104417.2-201ENST00000562989 1793 ntBASIC23.78■■□□□ 1.4
COL4A1P02462 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC23.78■■□□□ 1.4
COL4A1P02462 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A1P02462 AC005332.1-201ENST00000577698 1310 ntBASIC23.78■■□□□ 1.4
COL4A1P02462 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC23.77■■□□□ 1.4
COL4A1P02462 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
COL4A1P02462 AC009947.2-201ENST00000444014 672 ntBASIC23.77■■□□□ 1.4
COL4A1P02462 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.77■■□□□ 1.4
COL4A1P02462 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC23.77■■□□□ 1.4
COL4A1P02462 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC23.77■■□□□ 1.4
COL4A1P02462 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC23.77■■□□□ 1.4
COL4A1P02462 DFFB-212ENST00000625756 649 ntTSL 5 BASIC23.77■■□□□ 1.4
COL4A1P02462 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
COL4A1P02462 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC23.77■■□□□ 1.4
COL4A1P02462 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
COL4A1P02462 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.77■■□□□ 1.4
COL4A1P02462 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A1P02462 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL4A1P02462 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 CD81-212ENST00000526072 1172 ntTSL 5 BASIC23.76■■□□□ 1.39
COL4A1P02462 CD320-202ENST00000537716 1119 ntTSL 2 BASIC23.76■■□□□ 1.39
COL4A1P02462 GPX4-207ENST00000589115 812 ntTSL 2 BASIC23.76■■□□□ 1.39
COL4A1P02462 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC23.76■■□□□ 1.39
COL4A1P02462 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
COL4A1P02462 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC23.76■■□□□ 1.39
COL4A1P02462 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL4A1P02462 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC23.76■■□□□ 1.39
COL4A1P02462 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC23.76■■□□□ 1.39
COL4A1P02462 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 ILF2-202ENST00000368681 726 ntTSL 2 BASIC23.76■■□□□ 1.39
COL4A1P02462 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL4A1P02462 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC23.76■■□□□ 1.39
COL4A1P02462 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC23.76■■□□□ 1.39
COL4A1P02462 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
COL4A1P02462 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC23.76■■□□□ 1.39
COL4A1P02462 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A1P02462 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
COL4A1P02462 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A1P02462 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC23.75■■□□□ 1.39
COL4A1P02462 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A1P02462 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC23.75■■□□□ 1.39
COL4A1P02462 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A1P02462 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A1P02462 Telomerase-vert.1-201ENST00000363312 438 ntBASIC23.75■■□□□ 1.39
COL4A1P02462 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A1P02462 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A1P02462 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A1P02462 AC116407.4-201ENST00000623319 1061 ntBASIC23.75■■□□□ 1.39
COL4A1P02462 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
COL4A1P02462 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
COL4A1P02462 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A1P02462 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A1P02462 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A1P02462 AC112907.3-201ENST00000577781 2400 ntBASIC23.74■■□□□ 1.39
COL4A1P02462 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms