Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
TRAV5A0A0B4J249 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC15.07■□□□□ 0
TRAV5A0A0B4J249 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV5A0A0B4J249 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 CNN2P6-201ENST00000439038 900 ntBASIC15.06■□□□□ 0
TRAV5A0A0B4J249 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 AC018553.1-201ENST00000616682 1458 ntBASIC15.06■□□□□ 0
TRAV5A0A0B4J249 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV5A0A0B4J249 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV5A0A0B4J249 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.05■□□□□ 0
TRAV5A0A0B4J249 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV5A0A0B4J249 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.05■□□□□ 0
TRAV5A0A0B4J249 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV5A0A0B4J249 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
TRAV5A0A0B4J249 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.05■□□□□ 0
TRAV5A0A0B4J249 AC018470.1-201ENST00000624790 3129 ntBASIC15.05■□□□□ -0
TRAV5A0A0B4J249 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 AC023632.3-201ENST00000521633 145 ntBASIC15.05■□□□□ -0
TRAV5A0A0B4J249 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 C2orf69P4-201ENST00000565394 541 ntBASIC15.05■□□□□ -0
TRAV5A0A0B4J249 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 AC141586.3-201ENST00000562166 1838 ntBASIC15.05■□□□□ -0
TRAV5A0A0B4J249 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV5A0A0B4J249 AC090340.1-201ENST00000620778 4980 ntBASIC15.05■□□□□ -0
TRAV5A0A0B4J249 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 KRT18P11-201ENST00000435214 1283 ntBASIC15.04■□□□□ -0
TRAV5A0A0B4J249 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC137761.2-201ENST00000561729 223 ntBASIC15.04■□□□□ -0
TRAV5A0A0B4J249 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC145350.3-201ENST00000569033 163 ntBASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC011767.1-201ENST00000617410 1153 ntBASIC15.04■□□□□ -0
TRAV5A0A0B4J249 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 AC005332.8-201ENST00000622750 2735 ntBASIC15.04■□□□□ -0
TRAV5A0A0B4J249 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRAV5A0A0B4J249 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms