Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FHP1-201ENST00000442741 703 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 RHEBP2-201ENST00000450289 600 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 RPS17P11-201ENST00000474297 293 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 RN7SL41P-201ENST00000476144 297 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC119751.4-201ENST00000507498 357 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 RN7SKP21-201ENST00000516503 220 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 MIR4472-2-201ENST00000582069 67 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC026741.1-201ENST00000605892 482 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC245100.7-201ENST00000609678 442 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 VN1R9P-201ENST00000614184 867 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC091046.3-201ENST00000631455 1574 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC017007.4-201ENST00000503353 1352 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC087190.4-201ENST00000574616 8334 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 MIR659-201ENST00000384963 97 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 OR6C69P-201ENST00000394268 893 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 ARL4AP5-201ENST00000404372 599 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AL024507.1-201ENST00000412741 274 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 MTCO3P4-201ENST00000419236 787 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC023128.2-201ENST00000420880 1223 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC093422.3-201ENST00000428506 305 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC006994.1-201ENST00000438212 839 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 SCARNA10-201ENST00000459255 330 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC020890.1-201ENST00000491837 504 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 TPT1P3-201ENST00000492841 512 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 PPM1AP1-201ENST00000502740 1135 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 NPM1P6-201ENST00000521088 871 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AL109766.1-201ENST00000555080 552 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC233702.9-201ENST00000581528 203 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC069366.1-201ENST00000583159 838 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 RN7SL435P-201ENST00000584418 282 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC007275.1-201ENST00000621243 671 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AL590396.2-201ENST00000636511 1041 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 AC000374.1-201ENST00000434698 1745 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 CASC19-261ENST00000641853 1638 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 DDX18P4-201ENST00000511690 1966 ntBASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC3Q9BQI4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC083843.3-201ENST00000623679 2186 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 MFSD8-242ENST00000641690 4199 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 RNU6-468P-201ENST00000384003 109 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 RPL23AP59-201ENST00000399415 461 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL355143.1-201ENST00000407101 841 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 HMGB3P31-201ENST00000413333 595 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 UBE2V1P9-201ENST00000414760 368 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC013410.2-201ENST00000422627 201 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 OR2AH1P-201ENST00000425717 928 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC013262.1-201ENST00000426710 252 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 FO393419.3-201ENST00000428741 282 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms