Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC104307.1-201ENST00000616142 196 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC139769.3-201ENST00000618383 175 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS35Q96QK1 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS35Q96QK1 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS35Q96QK1 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 OR4K17-201ENST00000315543 1032 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 RNA5SP22-201ENST00000365393 109 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 MTND3P20-201ENST00000407663 186 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 TRGV6-201ENST00000417928 299 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC004448.2-201ENST00000422360 586 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 CR848007.2-201ENST00000424918 787 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 RPL18P10-201ENST00000425606 538 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 AL160175.1-201ENST00000428124 247 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 RSL24D1P8-201ENST00000434442 492 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 RPS20P1-201ENST00000434853 354 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 PHBP16-201ENST00000446318 950 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 APOOP2-201ENST00000461561 539 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 RPL23AP12-201ENST00000467573 473 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 RN7SL481P-201ENST00000477764 299 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 MIR4277-201ENST00000578298 84 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC008759.1-201ENST00000589783 983 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AL139395.1-201ENST00000603662 160 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 AC105074.1-201ENST00000623380 3095 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS35Q96QK1 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS35Q96QK1 EIF2AP4-201ENST00000424793 1781 ntBASIC4.35□□□□□ -1.71
VPS35Q96QK1 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS35Q96QK1 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 IGKV7-3-201ENST00000357453 298 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 RNA5SP443-201ENST00000363083 132 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 RNA5SP509-201ENST00000364577 119 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 RNU6-883P-201ENST00000384597 107 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 U3.22-201ENST00000391120 215 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS35Q96QK1 RPS20P14-201ENST00000412545 360 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 AL592293.2-201ENST00000422292 996 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 SKP1P3-201ENST00000429280 487 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 RPS29P17-201ENST00000430795 166 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 CBX1P1-201ENST00000440184 427 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 MTND2P3-201ENST00000452458 470 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 RPL7P32-201ENST00000457119 744 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC011276.1-201ENST00000469688 323 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC025181.1-201ENST00000477507 416 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC012158.1-204ENST00000483430 465 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 OR9N1P-202ENST00000494289 481 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC010476.1-201ENST00000519111 851 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 MIR548Y-201ENST00000582739 110 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC008638.3-201ENST00000603341 463 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AL160290.3-201ENST00000604869 165 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 Z98200.1-201ENST00000607298 470 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC012467.1-201ENST00000607740 256 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC055764.2-201ENST00000610089 670 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AP004607.9-201ENST00000618202 316 ntBASIC4.34□□□□□ -1.71
VPS35Q96QK1 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS35Q96QK1 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms