Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PSMC1P13-201ENST00000458195 985 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 RN7SKP13-201ENST00000515933 244 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 SCARNA14-201ENST00000516903 136 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 GTF2IP8-201ENST00000560687 584 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AC107993.1-201ENST00000591343 684 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AP005264.7-201ENST00000625003 745 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 VN1R8P-201ENST00000407739 893 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 SYF2P2-201ENST00000417620 583 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 FTH1P25-201ENST00000447665 469 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AC090136.1-201ENST00000520009 240 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AC233702.9-201ENST00000581528 203 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 MIR7154-201ENST00000620673 73 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 PRO1804-201ENST00000623780 2050 ntBASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 RPL5P30-201ENST00000465511 891 ntBASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 QTRT1P1-201ENST00000604344 1078 ntBASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 AC005000.2-201ENST00000605468 310 ntBASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 AC243312.2-201ENST00000623340 601 ntBASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 AC019278.1-201ENST00000623516 479 ntBASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 DDX18P4-201ENST00000511690 1966 ntBASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CCDC88AQ3V6T2 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 RNA5SP51-201ENST00000364750 119 ntBASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 RNU1-103P-201ENST00000516502 125 ntBASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 GNRHR2P1-201ENST00000555315 631 ntBASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 HSPD1P11-201ENST00000508643 1702 ntBASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC88AQ3V6T2 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 Z95327.2-201ENST00000414579 1873 ntBASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 AC127537.2-201ENST00000439258 465 ntBASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 UBE2CP3-201ENST00000502715 450 ntBASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 ASNSP4-201ENST00000511103 447 ntBASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 GMPSP1-201ENST00000514075 579 ntBASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 DEFB109D-201ENST00000529497 240 ntBASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC88AQ3V6T2 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC007529.1-201ENST00000418574 2178 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 RNU1-15P-201ENST00000353977 144 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 EIF4EP1-201ENST00000422311 642 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 RBMY1KP-201ENST00000423480 476 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC083863.1-201ENST00000438811 231 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 GEMIN8P3-201ENST00000445417 720 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 RPS4XP10-201ENST00000465034 731 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC012417.1-201ENST00000582307 1039 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 MIR3922-201ENST00000585192 84 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC018690.1-201ENST00000608144 626 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC090246.1-201ENST00000616499 426 ntBASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC88AQ3V6T2 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms