Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC111193.1-201ENST00000504097 155 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 ENPP7P9-201ENST00000514456 627 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AC138938.1-201ENST00000515431 782 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AP001269.3-201ENST00000588718 329 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 MIR7973-1-201ENST00000614683 76 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AC139769.3-201ENST00000618383 175 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.66□□□□□ -1.5
SMARCA1P28370 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
SMARCA1P28370 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.65□□□□□ -1.5
SMARCA1P28370 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
SMARCA1P28370 SDAD1P1-202ENST00000524156 2051 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC053481.2-202ENST00000582394 1500 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SMARCA1P28370 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SMARCA1P28370 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.65□□□□□ -1.5
SMARCA1P28370 RNA5SP113-201ENST00000410486 84 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.65□□□□□ -1.5
SMARCA1P28370 Z75741.2-201ENST00000417272 1167 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC092162.1-201ENST00000432828 434 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.65□□□□□ -1.5
SMARCA1P28370 HMGB1P45-201ENST00000435986 653 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.65□□□□□ -1.5
SMARCA1P28370 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC5.65□□□□□ -1.5
SMARCA1P28370 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC5.65□□□□□ -1.5
SMARCA1P28370 XACT-201ENST00000468762 497 ntTSL 5 BASIC5.65□□□□□ -1.5
SMARCA1P28370 PRDX3P4-201ENST00000470828 747 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC118465.1-201ENST00000513820 1271 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 SNORA3.4-201ENST00000515969 96 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 Y_RNA.688-201ENST00000516565 95 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.65□□□□□ -1.5
SMARCA1P28370 IGKV1-32-201ENST00000519290 311 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 OR8A2P-201ENST00000528631 952 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC090695.1-201ENST00000561269 1222 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC5.65□□□□□ -1.5
SMARCA1P28370 AL391358.1-201ENST00000605342 190 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AL121932.1-201ENST00000605542 214 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AC055764.2-201ENST00000610089 670 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AP000255.1-201ENST00000610276 676 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AC100847.1-201ENST00000611316 481 ntBASIC5.65□□□□□ -1.5
SMARCA1P28370 AL450345.1-202ENST00000605741 3881 ntBASIC5.65□□□□□ -1.51
SMARCA1P28370 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SMARCA1P28370 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.65□□□□□ -1.51
SMARCA1P28370 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
SMARCA1P28370 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SMARCA1P28370 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SMARCA1P28370 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
SMARCA1P28370 BX005019.1-201ENST00000561881 1810 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 ZFRP1-201ENST00000457579 2970 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 AC010329.2-201ENST00000595195 2737 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.64□□□□□ -1.51
SMARCA1P28370 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SMARCA1P28370 SNORD113-6-201ENST00000363345 75 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SMARCA1P28370 RNU6-83P-201ENST00000384568 112 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SMARCA1P28370 AL079342.2-201ENST00000403367 482 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 SFR1P1-201ENST00000403720 688 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.64□□□□□ -1.51
SMARCA1P28370 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.64□□□□□ -1.51
SMARCA1P28370 TRGV6-201ENST00000417928 299 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 AC009518.2-201ENST00000418056 731 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 MTND2P18-201ENST00000419962 1030 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 USP9YP11-201ENST00000427537 717 ntBASIC5.64□□□□□ -1.51
SMARCA1P28370 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.64□□□□□ -1.51
SMARCA1P28370 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms