Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP005212.3-201ENST00000619964 528 ntBASIC6.36□□□□□ -1.39
MSX1P28360 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
MSX1P28360 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
MSX1P28360 U6.101-201ENST00000637707 76 ntBASIC6.36□□□□□ -1.39
MSX1P28360 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC6.36□□□□□ -1.39
MSX1P28360 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 AL355488.2-201ENST00000609909 2850 ntBASIC6.36□□□□□ -1.39
MSX1P28360 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 USP44-208ENST00000552440 1818 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 RNY4P16-201ENST00000364768 94 ntBASIC6.35□□□□□ -1.39
MSX1P28360 RNU4-66P-201ENST00000365199 138 ntBASIC6.35□□□□□ -1.39
MSX1P28360 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 DEFB109C-201ENST00000382575 264 ntBASIC6.35□□□□□ -1.39
MSX1P28360 DEFB109B-201ENST00000382656 264 ntBASIC6.35□□□□□ -1.39
MSX1P28360 RPL7P60-201ENST00000397636 735 ntBASIC6.35□□□□□ -1.39
MSX1P28360 MRPL42P3-201ENST00000401492 326 ntBASIC6.35□□□□□ -1.39
MSX1P28360 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 RN7SKP146-201ENST00000410242 334 ntBASIC6.35□□□□□ -1.39
MSX1P28360 RN7SKP158-201ENST00000410453 326 ntBASIC6.35□□□□□ -1.39
MSX1P28360 HMGB3P2-201ENST00000411913 584 ntBASIC6.35□□□□□ -1.39
MSX1P28360 PRELID3BP11-201ENST00000414230 479 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 RPL36P18-201ENST00000419316 318 ntBASIC6.35□□□□□ -1.39
MSX1P28360 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
MSX1P28360 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 RPS24P8-201ENST00000431490 402 ntBASIC6.35□□□□□ -1.39
MSX1P28360 RPL34P6-201ENST00000432390 345 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 RPL12P49-201ENST00000441100 121 ntBASIC6.35□□□□□ -1.39
MSX1P28360 TRAPPC2P3-201ENST00000443200 321 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AL035666.1-201ENST00000446195 348 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC019084.1-201ENST00000457337 432 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AP1S2P1-201ENST00000457344 379 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC106872.2-201ENST00000494303 480 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 AC004062.1-201ENST00000509926 645 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 RNU6-976P-201ENST00000516086 111 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX1P28360 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX1P28360 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 AP000889.2-201ENST00000532684 490 ntBASIC6.35□□□□□ -1.39
MSX1P28360 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 ASB8-207ENST00000536953 923 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 AC007537.1-201ENST00000539347 327 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX1P28360 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX1P28360 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.35□□□□□ -1.39
MSX1P28360 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 MIR5690-201ENST00000583739 73 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC015818.6-201ENST00000584274 634 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC087575.1-201ENST00000585087 229 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX1P28360 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 AC211486.4-201ENST00000621495 113 ntBASIC6.35□□□□□ -1.39
MSX1P28360 CDRT1-208ENST00000630868 794 ntBASIC6.35□□□□□ -1.39
MSX1P28360 MTND5P19-201ENST00000424872 1794 ntBASIC6.35□□□□□ -1.39
MSX1P28360 AC015871.3-201ENST00000618835 2261 ntBASIC6.35□□□□□ -1.39
MSX1P28360 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms