Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC090132.1-201ENST00000524071 1480 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 DICER1-214ENST00000556045 2776 ntTSL 2 BASIC7.36□□□□□ -1.23
COL9A1P20849 SELP-202ENST00000367786 2402 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 ZNF610-207ENST00000601151 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 IARS-205ENST00000443024 4341 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 AOX2P-204ENST00000487742 3284 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 SLC22A10-201ENST00000332793 2026 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 FSTL5-203ENST00000427802 2920 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 TRIM16-212ENST00000578237 3206 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
COL9A1P20849 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 AC068860.1-201ENST00000623701 3736 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC7.35□□□□□ -1.23
COL9A1P20849 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 AC104051.2-201ENST00000518934 2461 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 ZSWIM5P3-201ENST00000511265 2743 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 TDGF1P3-202ENST00000602699 2710 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 RNU6-545P-201ENST00000362681 104 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 Y_RNA.473-201ENST00000384333 102 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 SNORA41-201ENST00000384675 132 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 U3.20-201ENST00000390909 217 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 SMIM2-201ENST00000400419 822 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 GAS5-202ENST00000414075 413 ntTSL 2 BASIC7.35□□□□□ -1.23
COL9A1P20849 UBE2FP1-201ENST00000416536 447 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC7.35□□□□□ -1.23
COL9A1P20849 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC7.35□□□□□ -1.23
COL9A1P20849 FTH1P20-201ENST00000434913 548 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 RPS26P40-201ENST00000435209 294 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AC092647.2-201ENST00000452998 253 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AC108059.3-201ENST00000456388 214 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 RN7SL390P-201ENST00000470634 284 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AC090686.1-201ENST00000481577 749 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 SNORA40.14-201ENST00000516543 86 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 IGLV1-62-201ENST00000518003 441 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC7.35□□□□□ -1.23
COL9A1P20849 AC084783.1-201ENST00000565846 910 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC7.35□□□□□ -1.23
COL9A1P20849 RBM4-213ENST00000578778 582 ntTSL 4 BASIC7.35□□□□□ -1.23
COL9A1P20849 AC060771.1-201ENST00000582031 164 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 RN7SL178P-201ENST00000582930 304 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 RPSAP66-201ENST00000592196 606 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 SMIM12P1-201ENST00000603004 274 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 AL021918.2-201ENST00000613415 194 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.35□□□□□ -1.23
COL9A1P20849 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 C7orf31-202ENST00000409280 3357 ntAPPRIS P1 TSL 2 BASIC7.35□□□□□ -1.23
COL9A1P20849 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 MAPK10-281ENST00000641170 3070 ntBASIC7.35□□□□□ -1.23
COL9A1P20849 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC7.35□□□□□ -1.23
COL9A1P20849 DAZ2-207ENST00000382449 3791 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC7.35□□□□□ -1.23
COL9A1P20849 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC7.35□□□□□ -1.23
COL9A1P20849 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL9A1P20849 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC7.34□□□□□ -1.23
COL9A1P20849 KIAA0753-201ENST00000361413 4859 ntAPPRIS P2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 CCDC77-202ENST00000412006 2253 ntAPPRIS ALT2 TSL 2 BASIC7.34□□□□□ -1.23
COL9A1P20849 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 RN7SKP95-201ENST00000362860 303 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RN7SKP115-201ENST00000363177 317 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RNA5SP512-201ENST00000364550 120 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RN7SKP55-201ENST00000364888 307 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RNU6-125P-201ENST00000384505 107 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AC110754.1-201ENST00000399740 601 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 PRELID1P1-201ENST00000403549 660 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AL583834.1-201ENST00000406943 343 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AP000275.1-201ENST00000411943 390 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 Z99755.1-201ENST00000414048 380 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 AC245014.1-201ENST00000427732 381 ntTSL 5 BASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms