Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SGCEO43556 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.81□□□□□ -1.8
SGCEO43556 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.81□□□□□ -1.8
SGCEO43556 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SGCEO43556 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SGCEO43556 AL137100.1-201ENST00000556703 1620 ntBASIC3.81□□□□□ -1.8
SGCEO43556 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.8□□□□□ -1.8
SGCEO43556 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SGCEO43556 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SGCEO43556 HSPA8P1-201ENST00000425843 1833 ntBASIC3.8□□□□□ -1.8
SGCEO43556 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.8□□□□□ -1.8
SGCEO43556 AC007685.1-201ENST00000329806 452 ntBASIC3.8□□□□□ -1.8
SGCEO43556 RNA5SP175-201ENST00000364275 119 ntBASIC3.8□□□□□ -1.8
SGCEO43556 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SGCEO43556 RPS4XP9-201ENST00000405151 780 ntBASIC3.8□□□□□ -1.8
SGCEO43556 VN1R8P-201ENST00000407739 893 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.8□□□□□ -1.8
SGCEO43556 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.8□□□□□ -1.8
SGCEO43556 RPS23P10-201ENST00000416185 486 ntBASIC3.8□□□□□ -1.8
SGCEO43556 CEACAMP1-201ENST00000434624 1035 ntBASIC3.8□□□□□ -1.8
SGCEO43556 FTH1P16-201ENST00000435241 552 ntBASIC3.8□□□□□ -1.8
SGCEO43556 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SGCEO43556 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 NDUFA12P1-201ENST00000455914 406 ntBASIC3.8□□□□□ -1.8
SGCEO43556 RPS29P22-201ENST00000472363 168 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AC068305.1-201ENST00000497406 726 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SGCEO43556 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.8□□□□□ -1.8
SGCEO43556 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SGCEO43556 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.8□□□□□ -1.8
SGCEO43556 VN1R84P-201ENST00000593697 235 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AC025175.1-201ENST00000606482 759 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AC090948.1-201ENST00000607464 549 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AL021997.2-201ENST00000615674 271 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AL590410.1-201ENST00000617925 333 ntBASIC3.8□□□□□ -1.8
SGCEO43556 uc_338.13-201ENST00000618243 179 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AC233309.1-201ENST00000619522 751 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AC019278.1-201ENST00000623516 479 ntBASIC3.8□□□□□ -1.8
SGCEO43556 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC3.8□□□□□ -1.8
SGCEO43556 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SGCEO43556 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.8□□□□□ -1.8
SGCEO43556 AC009452.1-201ENST00000640823 606 ntBASIC3.8□□□□□ -1.8
SGCEO43556 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SGCEO43556 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SGCEO43556 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SGCEO43556 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SGCEO43556 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 Z82217.1-201ENST00000625157 8149 ntBASIC3.79□□□□□ -1.8
SGCEO43556 MTND4P10-201ENST00000446199 1363 ntBASIC3.79□□□□□ -1.8
SGCEO43556 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 MIR331-201ENST00000362302 94 ntBASIC3.79□□□□□ -1.8
SGCEO43556 MIR320B1-201ENST00000390209 79 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC097374.1-203ENST00000400783 485 ntBASIC3.79□□□□□ -1.8
SGCEO43556 SNORA11F-201ENST00000408237 128 ntBASIC3.79□□□□□ -1.8
SGCEO43556 JKAMPP1-201ENST00000413804 919 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.79□□□□□ -1.8
SGCEO43556 RBMY1KP-201ENST00000423480 476 ntBASIC3.79□□□□□ -1.8
SGCEO43556 PRELID3BP10-201ENST00000431957 584 ntBASIC3.79□□□□□ -1.8
SGCEO43556 PHBP16-201ENST00000446318 950 ntBASIC3.79□□□□□ -1.8
SGCEO43556 ABCF2P2-201ENST00000450549 296 ntBASIC3.79□□□□□ -1.8
SGCEO43556 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC3.79□□□□□ -1.8
SGCEO43556 RPL7P32-201ENST00000457119 744 ntBASIC3.79□□□□□ -1.8
SGCEO43556 RPL7P22-201ENST00000466005 733 ntBASIC3.79□□□□□ -1.8
SGCEO43556 RPS27AP16-201ENST00000492222 470 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC010374.1-201ENST00000503762 1237 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.79□□□□□ -1.8
SGCEO43556 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC3.79□□□□□ -1.8
SGCEO43556 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.79□□□□□ -1.8
SGCEO43556 TOMM20P2-201ENST00000540082 421 ntBASIC3.79□□□□□ -1.8
SGCEO43556 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC3.79□□□□□ -1.8
SGCEO43556 AC027281.1-201ENST00000574178 758 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC115989.2-201ENST00000578640 563 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC234771.5-201ENST00000600161 514 ntBASIC3.79□□□□□ -1.8
SGCEO43556 MTCO2P22-201ENST00000603246 681 ntBASIC3.79□□□□□ -1.8
SGCEO43556 ABI1P1-201ENST00000603375 1120 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC113403.1-201ENST00000604910 193 ntBASIC3.79□□□□□ -1.8
SGCEO43556 RN7SL722P-201ENST00000617780 284 ntBASIC3.79□□□□□ -1.8
SGCEO43556 RN7SL565P-201ENST00000618246 284 ntBASIC3.79□□□□□ -1.8
SGCEO43556 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.79□□□□□ -1.8
SGCEO43556 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SGCEO43556 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.79□□□□□ -1.8
SGCEO43556 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SGCEO43556 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.79□□□□□ -1.8
SGCEO43556 AC007529.1-201ENST00000418574 2178 ntBASIC3.79□□□□□ -1.8
SGCEO43556 MAPK10-253ENST00000641010 4072 ntBASIC3.79□□□□□ -1.8
SGCEO43556 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms