Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC008072.1-201ENST00000434254 824 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC019084.1-201ENST00000457337 432 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC105918.1-201ENST00000474399 838 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 COX6B1P2-201ENST00000489624 230 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 IGHVIII-38-1-201ENST00000521454 282 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 FAM92A1P1-201ENST00000528023 890 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC008126.1-201ENST00000549019 480 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 LSM3P2-201ENST00000551246 273 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AL157394.1-201ENST00000562983 1224 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 MIR4260-201ENST00000583107 67 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC006363.1-201ENST00000603806 463 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC010338.1-201ENST00000621823 717 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 TEX41-256ENST00000626411 368 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 NXF4-202ENST00000416098 1465 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AC027279.1-201ENST00000568885 4284 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.36
CCDC39Q9UFE4 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.36
CCDC39Q9UFE4 TTC39DP-201ENST00000416781 1688 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.9-201ENST00000362354 101 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 RNU4-73P-201ENST00000363164 141 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 RNU6-253P-201ENST00000384730 105 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.582-201ENST00000391023 95 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 RPL31P1-201ENST00000398116 372 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 VN1R36P-201ENST00000414936 291 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 OFD1P2Y-201ENST00000421895 1149 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 MTND2P23-201ENST00000422990 651 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 RPL21P43-201ENST00000425440 472 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC126120.1-201ENST00000431082 470 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 OR7E116P-201ENST00000448529 957 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC098824.1-201ENST00000453565 980 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 RN7SL649P-201ENST00000496974 275 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC022483.1-201ENST00000514020 567 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AP001804.2-201ENST00000533932 910 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AL391840.1-201ENST00000571144 367 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC005261.5-201ENST00000596280 355 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC012557.1-201ENST00000607115 611 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AL442067.2-201ENST00000614033 363 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC073593.1-201ENST00000624500 411 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 MRRFP1-201ENST00000435941 1675 ntBASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC39Q9UFE4 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC39Q9UFE4 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms