Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MAPK6PS3-201ENST00000403865 2162 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 Y_RNA.51-201ENST00000362725 102 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 RNU6-931P-201ENST00000363850 107 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 RNU4-24P-201ENST00000364565 139 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AL161909.1-201ENST00000397390 712 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 P2RY10P2-201ENST00000416730 913 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 MTND1P20-201ENST00000430341 950 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AL161722.2-201ENST00000434731 981 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 Z80107.2-201ENST00000445127 392 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 KNOP1P3-201ENST00000446933 426 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 RPS3AP41-201ENST00000462701 778 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 HMGN2P25-201ENST00000486956 268 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC022133.1-201ENST00000490961 571 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 OR4A43P-201ENST00000532938 908 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 MIR4675-201ENST00000577898 77 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 MIR3915-201ENST00000578518 97 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AC011487.3-201ENST00000593607 453 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 FAM25E-202ENST00000608562 189 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 MIR6748-201ENST00000610433 71 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AL607023.1-201ENST00000620045 248 ntBASIC5.4□□□□□ -1.54
TDP1Q9NUW8 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC5.4□□□□□ -1.54
TDP1Q9NUW8 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 ASNSP1-204ENST00000641977 1664 ntBASIC5.4□□□□□ -1.55
TDP1Q9NUW8 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 AC119744.1-201ENST00000454746 1715 ntBASIC5.4□□□□□ -1.55
TDP1Q9NUW8 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
TDP1Q9NUW8 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 RN7SKP115-201ENST00000363177 317 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 RNA5SP455-201ENST00000365190 119 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 RNU11-201ENST00000387069 134 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 HSFY4P-201ENST00000415994 1181 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 TRBV24OR9-2-201ENST00000416632 435 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC104837.2-201ENST00000427236 424 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 DYNLL1P7-201ENST00000429273 258 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 PPIAP17-201ENST00000438507 471 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 CCDC75P1-201ENST00000469247 791 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AP000797.2-201ENST00000475768 606 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC083982.1-201ENST00000485679 344 ntBASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.39□□□□□ -1.55
TDP1Q9NUW8 AC048346.1-201ENST00000510247 144 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms