Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
CHMP4AQ9BY43 MFSD8-213ENST00000641134 1327 ntBASIC6.18□□□□□ -1.42
CHMP4AQ9BY43 MTCO1P24-201ENST00000515438 1558 ntBASIC6.18□□□□□ -1.42
CHMP4AQ9BY43 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 U3.30-201ENST00000391308 210 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC004690.1-201ENST00000418216 328 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 RPS15AP40-201ENST00000419621 391 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 TCEA1P3-201ENST00000443005 880 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 RPL7P55-201ENST00000450522 746 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 MRPL35P4-201ENST00000453682 566 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC245028.2-201ENST00000458673 253 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC069304.1-201ENST00000491593 704 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC025768.1-201ENST00000510057 267 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC023141.12-201ENST00000512399 199 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 HMGB1P23-201ENST00000518743 568 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC139103.1-201ENST00000534696 1030 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AP001880.2-201ENST00000538233 448 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AP003717.3-201ENST00000544832 1180 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 OR6C73P-201ENST00000546432 358 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC079148.1-201ENST00000565944 819 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 MIR4472-2-201ENST00000582069 67 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC091488.1-201ENST00000604239 660 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC096586.1-201ENST00000610267 561 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC006213.5-201ENST00000619673 288 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 MTND5P3-201ENST00000438536 1800 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 AC107068.1-201ENST00000563286 4218 ntBASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CHMP4AQ9BY43 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 RNU6-792P-201ENST00000363490 107 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 RNU6-796P-201ENST00000391086 107 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC092832.1-201ENST00000422934 400 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 PSMA2P3-201ENST00000429685 675 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 RPL17P35-201ENST00000432217 549 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AL138878.2-201ENST00000440581 1241 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 GTF3AP5-201ENST00000442645 697 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 CEACAMP6-201ENST00000452007 574 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 ALDH7A1P3-201ENST00000492517 345 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 HMGB3P13-201ENST00000511263 607 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 PTGES3P3-201ENST00000511479 482 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 RNU6-488P-201ENST00000515918 99 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 MIR4700-201ENST00000578311 74 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC011453.2-201ENST00000603737 729 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AL163051.2-201ENST00000618976 735 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AL445493.3-201ENST00000619568 477 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AL359922.3-201ENST00000624779 1670 ntBASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4AQ9BY43 AC010300.1-201ENST00000600671 5134 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 MTND5P28-201ENST00000438005 1594 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 NEAT1-202ENST00000501122 22743 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 GLS-204ENST00000409428 816 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 TMBIM7P-201ENST00000418074 855 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 OR2B7P-201ENST00000429302 934 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC007686.1-201ENST00000488511 463 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms