Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 NUTF2P7-201ENST00000453086 375 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 RPL21P126-201ENST00000470049 478 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 OR5H3P-201ENST00000502817 919 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 FKBP1BP1-201ENST00000553366 325 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AL139022.2-201ENST00000606934 443 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AL391834.1-201ENST00000609609 560 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC015804.1-201ENST00000622935 435 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC068724.3-201ENST00000625906 87 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 SCN1A-220ENST00000641603 12506 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC092079.1-201ENST00000558620 1985 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AL731566.1-201ENST00000620490 1937 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC008549.2-201ENST00000333482 706 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 RNU6-354P-201ENST00000383862 107 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 RNU6-610P-201ENST00000384264 107 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 RNU6-244P-201ENST00000391028 104 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AL356387.2-201ENST00000422272 243 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC073310.1-201ENST00000423226 1033 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 GTF2IP2-201ENST00000424290 697 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 CKS1BP6-201ENST00000424932 240 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 ETF1P3-201ENST00000430422 1160 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 MRPL50P1-201ENST00000431951 384 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 NMNAT1P2-201ENST00000435192 860 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC097499.1-201ENST00000444277 208 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 RPL7L1P1-201ENST00000448259 785 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC022431.1-201ENST00000450941 438 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 RNA5SP303-201ENST00000516192 130 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC107918.3-201ENST00000533272 382 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC126365.2-201ENST00000580630 379 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 MIR3939-201ENST00000582614 106 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC103792.1-201ENST00000603591 919 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC090948.1-201ENST00000607464 549 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AP005229.2-201ENST00000609980 697 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AC005332.5-201ENST00000591222 2919 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 MAPK10-286ENST00000641208 8747 ntBASIC4.47□□□□□ -1.69
CCDC3Q9BQI4 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.69
CCDC3Q9BQI4 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
CCDC3Q9BQI4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CCDC3Q9BQI4 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.46□□□□□ -1.69
CCDC3Q9BQI4 AC104118.1-201ENST00000607625 1589 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 RNU6-452P-201ENST00000384406 107 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AP002784.2-201ENST00000397300 549 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 MIR1193-201ENST00000408109 78 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AP000357.1-201ENST00000409926 1165 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 RN7SKP97-201ENST00000410966 333 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 TCEA1P4-201ENST00000415066 844 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC008173.1-201ENST00000418901 264 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 RPL17P36-201ENST00000420302 549 ntBASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC3Q9BQI4 AC005189.1-201ENST00000431286 310 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms