Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AP000790.1-201ENST00000528891 737 ntBASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AC107954.1-201ENST00000565906 727 ntBASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AC068790.5-201ENST00000602741 355 ntBASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AL451049.1-201ENST00000608672 497 ntBASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AL132765.2-201ENST00000610812 351 ntBASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AL137067.2-201ENST00000621202 131 ntBASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 SHQ1P1-201ENST00000437111 1544 ntBASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.89□□□□□ -1.47
UBE3DQ7Z6J8 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC130304.1-201ENST00000622942 2385 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RNA5SP514-201ENST00000363717 111 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RNU6-317P-201ENST00000384031 107 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RNU6-373P-201ENST00000411247 98 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC211486.3-201ENST00000412694 621 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 HMGA1P8-201ENST00000414130 321 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC099782.1-201ENST00000425889 474 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 OR52B5P-201ENST00000435337 951 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RPL22P17-201ENST00000438729 315 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RPL17P49-201ENST00000443728 411 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC112187.1-201ENST00000455837 479 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 MTCO1P42-201ENST00000457379 726 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RPS20P20-201ENST00000460498 340 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RPL12P30-201ENST00000488389 499 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC139783.2-201ENST00000504847 1145 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC090424.1-201ENST00000535243 736 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC037471.2-201ENST00000564941 598 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC015917.1-201ENST00000579654 510 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC018638.8-201ENST00000588755 281 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC020916.2-201ENST00000591242 360 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC027243.2-201ENST00000602530 724 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC008555.7-201ENST00000605008 583 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AL136363.1-201ENST00000605349 337 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RNU6-87P-201ENST00000607561 108 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 YWHAEP7-203ENST00000622054 312 ntBASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.88□□□□□ -1.47
UBE3DQ7Z6J8 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms