Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 RNU6-252P-201ENST00000363232 107 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 RNA5SP28-201ENST00000363841 119 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 MIR1303-201ENST00000408625 86 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AC010326.1-201ENST00000462726 602 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 MTND4LP2-201ENST00000502312 285 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 RNA5SP360-201ENST00000516555 118 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 MIR4458-201ENST00000578872 75 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 ADAD1P2-201ENST00000588476 646 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AC008536.1-201ENST00000602872 669 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AC090181.2-201ENST00000602975 672 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AC006946.3-201ENST00000609791 756 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 ATE1-AS1-202ENST00000636460 506 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
NIPAL3Q6P499 OR51H2P-202ENST00000641424 3046 ntBASIC4.09□□□□□ -1.75
NIPAL3Q6P499 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NIPAL3Q6P499 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NIPAL3Q6P499 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NIPAL3Q6P499 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NIPAL3Q6P499 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
NIPAL3Q6P499 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
NIPAL3Q6P499 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.09□□□□□ -1.76
NIPAL3Q6P499 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 OR52B1P-201ENST00000316506 909 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC007529.1-201ENST00000418574 2178 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 UBTFL3-201ENST00000418934 1024 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC062016.2-201ENST00000420950 676 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 CENPIP1-201ENST00000425713 902 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 MORF4L1P7-201ENST00000426038 703 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 RPS12P10-201ENST00000427031 377 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 CDY14P-201ENST00000431260 1014 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 CDY12P-201ENST00000440679 1015 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 RPS27P5-201ENST00000444247 244 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 CDY13P-201ENST00000445813 1015 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC073264.2-201ENST00000448886 166 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 CDY23P-201ENST00000451661 1014 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 CEACAMP6-201ENST00000452007 574 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 SCARNA10-201ENST00000459255 330 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 RPL7AP28-201ENST00000464513 571 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 RPL23AP71-201ENST00000470966 469 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 UBTFL6-201ENST00000477929 1024 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 NPM1P17-201ENST00000479221 602 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 FTH1P24-201ENST00000503502 462 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 HSPA8P19-201ENST00000505359 1517 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 PPBPP1-201ENST00000510807 373 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC007016.1-201ENST00000512110 244 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.08□□□□□ -1.76
NIPAL3Q6P499 ABI1P1-201ENST00000603375 1120 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 KATNBL1P5-201ENST00000605015 517 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AP001033.2-201ENST00000609701 1003 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AC116651.1-201ENST00000609724 556 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 AL138721.1-201ENST00000616756 179 ntBASIC4.08□□□□□ -1.76
NIPAL3Q6P499 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms