Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
FOXF1Q12946 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXF1Q12946 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXF1Q12946 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXF1Q12946 MIR372-201ENST00000362225 67 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXF1Q12946 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC073136.2-201ENST00000417282 849 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AL691449.1-201ENST00000426570 421 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 YY1P1-201ENST00000427625 668 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AC091390.1-201ENST00000433904 331 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 ELOCP18-201ENST00000434209 337 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.64□□□□□ -1.83
FOXF1Q12946 OR4C10P-201ENST00000434991 931 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 VN1R25P-201ENST00000443385 738 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC006326.1-201ENST00000445465 787 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 RPS11P1-201ENST00000451072 473 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 VN1R40P-201ENST00000455196 941 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 IGBP1P5-201ENST00000507524 1000 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 PRELID3BP5-201ENST00000508612 460 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.64□□□□□ -1.83
FOXF1Q12946 IGHV3-63-201ENST00000518422 341 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC022968.1-201ENST00000567372 442 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 AC068020.1-201ENST00000594215 661 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC3.64□□□□□ -1.83
FOXF1Q12946 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXF1Q12946 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXF1Q12946 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXF1Q12946 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXF1Q12946 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
FOXF1Q12946 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXF1Q12946 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXF1Q12946 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXF1Q12946 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 CASC19-255ENST00000641733 1385 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 AC018555.1-201ENST00000567548 1980 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXF1Q12946 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.63□□□□□ -1.83
FOXF1Q12946 HMGB3P19-201ENST00000403971 560 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 MIR1251-201ENST00000408552 70 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXF1Q12946 TRIM60P17-201ENST00000415181 719 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXF1Q12946 AC004975.1-201ENST00000428733 208 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 MTCO1P54-201ENST00000430139 712 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXF1Q12946 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXF1Q12946 TBCAP1-201ENST00000436520 327 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 ELOCP8-201ENST00000439309 332 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 ELOCP15-201ENST00000442090 332 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXF1Q12946 AC110792.1-201ENST00000491826 472 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 RN7SKP5-201ENST00000517045 272 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 MIR2116-201ENST00000517221 80 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.63□□□□□ -1.83
FOXF1Q12946 GNRHR2P1-201ENST00000555315 631 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.63□□□□□ -1.83
FOXF1Q12946 AC020910.2-201ENST00000603635 610 ntBASIC3.63□□□□□ -1.83
FOXF1Q12946 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
FOXF1Q12946 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXF1Q12946 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXF1Q12946 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.63□□□□□ -1.83
FOXF1Q12946 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXF1Q12946 MFSD8-220ENST00000641243 1422 ntBASIC3.62□□□□□ -1.83
FOXF1Q12946 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.62□□□□□ -1.83
FOXF1Q12946 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
FOXF1Q12946 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXF1Q12946 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
FOXF1Q12946 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.62□□□□□ -1.83
FOXF1Q12946 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXF1Q12946 MIR137-201ENST00000385223 102 ntBASIC3.62□□□□□ -1.83
FOXF1Q12946 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms