Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.77□□□□□ -1.49
RNF4P78317 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 MRPS21P8-201ENST00000569196 235 ntBASIC5.77□□□□□ -1.49
RNF4P78317 MIR4701-201ENST00000583094 63 ntBASIC5.77□□□□□ -1.49
RNF4P78317 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.77□□□□□ -1.49
RNF4P78317 HMGN1P30-201ENST00000589286 268 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.77□□□□□ -1.49
RNF4P78317 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 AC019193.2-201ENST00000610012 634 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC009268.2-201ENST00000621925 457 ntBASIC5.77□□□□□ -1.49
RNF4P78317 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.77□□□□□ -1.49
RNF4P78317 AC092070.2-203ENST00000598377 3644 ntBASIC5.77□□□□□ -1.49
RNF4P78317 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 PROS2P-201ENST00000474651 1951 ntBASIC5.76□□□□□ -1.49
RNF4P78317 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 AC007842.1-201ENST00000597336 2039 ntBASIC5.76□□□□□ -1.49
RNF4P78317 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 QRSL1P1-201ENST00000400977 1540 ntBASIC5.76□□□□□ -1.49
RNF4P78317 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 RNU6-483P-201ENST00000384088 108 ntBASIC5.76□□□□□ -1.49
RNF4P78317 RNU6-729P-201ENST00000384399 107 ntBASIC5.76□□□□□ -1.49
RNF4P78317 RNU6-769P-201ENST00000384407 104 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AL356776.1-201ENST00000406574 447 ntBASIC5.76□□□□□ -1.49
RNF4P78317 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 RNA5SP431-201ENST00000410312 120 ntBASIC5.76□□□□□ -1.49
RNF4P78317 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 AC127526.2-201ENST00000426436 775 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC023347.2-201ENST00000433994 462 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC002486.1-201ENST00000435098 391 ntBASIC5.76□□□□□ -1.49
RNF4P78317 OR3D1P-201ENST00000438288 955 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 RPL7P6-201ENST00000480903 738 ntBASIC5.76□□□□□ -1.49
RNF4P78317 RPL15P21-201ENST00000495592 567 ntBASIC5.76□□□□□ -1.49
RNF4P78317 HMGN1P12-201ENST00000499125 195 ntBASIC5.76□□□□□ -1.49
RNF4P78317 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 NENFP3-201ENST00000503735 313 ntBASIC5.76□□□□□ -1.49
RNF4P78317 KCTD9P5-201ENST00000504141 1170 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC022447.3-201ENST00000506865 495 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 AC010493.1-201ENST00000513479 292 ntBASIC5.76□□□□□ -1.49
RNF4P78317 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 RNU2-46P-201ENST00000517038 113 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.76□□□□□ -1.49
RNF4P78317 RPA2P3-201ENST00000533268 770 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 AC006512.2-201ENST00000543250 486 ntBASIC5.76□□□□□ -1.49
RNF4P78317 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.76□□□□□ -1.49
RNF4P78317 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 AL157394.1-201ENST00000562983 1224 ntBASIC5.76□□□□□ -1.49
RNF4P78317 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 MIR3682-201ENST00000581338 84 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC027229.1-201ENST00000583887 253 ntBASIC5.76□□□□□ -1.49
RNF4P78317 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 AC115085.1-201ENST00000588924 229 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms