Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 AC008079.2-201ENST00000623543 20396 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC007996.1-201ENST00000620414 2821 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXD3P31249 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 Y_RNA.311-201ENST00000365068 96 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HOXD3P31249 RNU6-192P-201ENST00000391253 100 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 RN7SKP213-201ENST00000410746 298 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 Y_RNA.619-201ENST00000410951 90 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 RN7SKP17-201ENST00000411242 351 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 RPL7P8-201ENST00000411964 730 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC007161.1-204ENST00000423039 460 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 RPL7P56-201ENST00000429441 717 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 NPM1P18-201ENST00000434232 732 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 CBX1P4-201ENST00000439415 457 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 YWHAQP9-201ENST00000445891 512 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 IGBP1P3-201ENST00000447449 1000 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 OR6C5P-201ENST00000452388 923 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 RPL10P17-201ENST00000453852 316 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 SNORD125-201ENST00000459538 96 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC015724.1-201ENST00000478577 156 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AC069304.1-201ENST00000491593 704 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 AC048346.1-201ENST00000510247 144 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AC091965.2-201ENST00000512324 613 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 SNORA70.11-201ENST00000515987 138 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 SNORA70.13-201ENST00000516116 138 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC060788.1-201ENST00000521318 469 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 HIGD1AP10-201ENST00000527837 282 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXD3P31249 AGGF1P4-201ENST00000568249 801 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC006272.2-201ENST00000594725 163 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 AL390816.3-201ENST00000604527 1066 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AL391497.1-201ENST00000608671 547 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AP004247.3-201ENST00000608682 624 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AL136981.2-201ENST00000617319 734 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC016717.3-201ENST00000624730 554 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 AC092192.1-201ENST00000633154 1018 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AC090582.1-201ENST00000636321 199 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HOXD3P31249 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.24□□□□□ -1.73
HOXD3P31249 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXD3P31249 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HOXD3P31249 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.24□□□□□ -1.73
HOXD3P31249 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 AC011477.1-204ENST00000623416 1325 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HOXD3P31249 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXD3P31249 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
HOXD3P31249 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXD3P31249 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXD3P31249 RNU5D-1-201ENST00000363299 116 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 RNU6-839P-201ENST00000363347 108 ntBASIC4.23□□□□□ -1.73
HOXD3P31249 U3.10-201ENST00000364459 214 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms