Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 Z92545.1-201ENST00000411782 234 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 DYNLL1P7-201ENST00000429273 258 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A3P25940 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.85□□□□□ -1.63
COL5A3P25940 TPT1P1-201ENST00000458495 518 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.85□□□□□ -1.63
COL5A3P25940 SETP6-201ENST00000479329 568 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 RPL31P61-201ENST00000496160 376 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 HMGN1P11-201ENST00000508668 303 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.85□□□□□ -1.63
COL5A3P25940 DEFB109D-201ENST00000529497 240 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.85□□□□□ -1.63
COL5A3P25940 OR2BH1P-201ENST00000608850 864 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 PCA3_2.1-201ENST00000612507 409 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 AC026368.1-201ENST00000614934 690 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 AC005858.4-201ENST00000623191 700 ntBASIC4.85□□□□□ -1.63
COL5A3P25940 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.85□□□□□ -1.63
COL5A3P25940 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
COL5A3P25940 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A3P25940 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.85□□□□□ -1.63
COL5A3P25940 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.85□□□□□ -1.63
COL5A3P25940 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL5A3P25940 MTCO1P12-201ENST00000414273 1543 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL5A3P25940 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
COL5A3P25940 RNU1-33P-201ENST00000364249 162 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 SEPT7P8-201ENST00000413308 775 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.84□□□□□ -1.63
COL5A3P25940 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.84□□□□□ -1.63
COL5A3P25940 PSMC1P13-201ENST00000458195 985 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 USP9YP2-201ENST00000504503 1000 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 RAC1P2-201ENST00000511164 579 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 USP9YP1-201ENST00000513521 1002 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 SNORA70.18-201ENST00000516696 98 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.84□□□□□ -1.63
COL5A3P25940 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.84□□□□□ -1.63
COL5A3P25940 MIR8058-201ENST00000615737 89 ntBASIC4.84□□□□□ -1.63
COL5A3P25940 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.84□□□□□ -1.63
COL5A3P25940 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.84□□□□□ -1.63
COL5A3P25940 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL5A3P25940 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL5A3P25940 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.84□□□□□ -1.63
COL5A3P25940 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COL5A3P25940 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL5A3P25940 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
COL5A3P25940 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL5A3P25940 MAPK10-320ENST00000641462 6696 ntBASIC4.84□□□□□ -1.64
COL5A3P25940 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.84□□□□□ -1.64
COL5A3P25940 A2MP1-204ENST00000566278 4130 ntBASIC4.84□□□□□ -1.64
COL5A3P25940 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.84□□□□□ -1.64
COL5A3P25940 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
COL5A3P25940 OR52E6-202ENST00000379946 954 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 ZNF602P-201ENST00000405929 924 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 MIR1251-201ENST00000408552 70 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 SNORA3C-201ENST00000408792 125 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.83□□□□□ -1.64
COL5A3P25940 FTH1P25-201ENST00000447665 469 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 AC073387.1-201ENST00000453261 709 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 RNA5SP103-201ENST00000459503 118 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 RN7SL601P-201ENST00000471221 293 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 RNA5SP208-201ENST00000516156 78 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 AP001284.1-201ENST00000528393 2118 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 AC107016.1-201ENST00000550463 337 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 AC092354.2-201ENST00000607786 514 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 AL138820.1-201ENST00000617901 5305 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
COL5A3P25940 AC007823.1-201ENST00000569932 1566 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL5A3P25940 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.83□□□□□ -1.64
COL5A3P25940 SNORD9-201ENST00000362566 104 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 AP000563.1-201ENST00000490865 758 ntBASIC4.83□□□□□ -1.64
COL5A3P25940 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.83□□□□□ -1.64
COL5A3P25940 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL5A3P25940 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A3P25940 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
COL5A3P25940 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL5A3P25940 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A3P25940 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
COL5A3P25940 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A3P25940 CDY11P-201ENST00000447168 1651 ntBASIC4.82□□□□□ -1.64
COL5A3P25940 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
COL5A3P25940 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A3P25940 VDAC2P1-201ENST00000399358 958 ntBASIC4.82□□□□□ -1.64
COL5A3P25940 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.82□□□□□ -1.64
COL5A3P25940 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.82□□□□□ -1.64
COL5A3P25940 RPS4XP12-201ENST00000461747 709 ntBASIC4.82□□□□□ -1.64
COL5A3P25940 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A3P25940 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A3P25940 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A3P25940 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.82□□□□□ -1.64
COL5A3P25940 AC009852.2-201ENST00000567898 485 ntBASIC4.82□□□□□ -1.64
COL5A3P25940 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms