Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC004232.3-201ENST00000622977 525 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD4P09016 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.2□□□□□ -1.74
HOXD4P09016 IQCB2P-201ENST00000401788 1633 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
HOXD4P09016 AC011266.1-201ENST00000624119 3569 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.2□□□□□ -1.74
HOXD4P09016 AL136164.3-201ENST00000624429 3978 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD4P09016 AP000756.2-201ENST00000624168 2567 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC022893.2-201ENST00000564832 3296 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXD4P09016 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 RNU6-650P-201ENST00000365658 111 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD4P09016 RNU6-925P-201ENST00000384629 104 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AL590762.2-201ENST00000395798 571 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD4P09016 BTF3P9-201ENST00000418784 283 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 SKP1P3-201ENST00000429280 487 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 BX119904.1-201ENST00000432026 348 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 NMNAT1P2-201ENST00000435192 860 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD4P09016 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD4P09016 MRPL48P1-201ENST00000445390 636 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 FCF1P6-201ENST00000456841 595 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 OR9N1P-202ENST00000494289 481 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 MTCO2P9-201ENST00000503214 694 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC093770.1-201ENST00000511559 571 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 MTATP6P9-201ENST00000515039 680 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 snoU109.6-201ENST00000516831 118 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD4P09016 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD4P09016 AP000827.1-201ENST00000527814 258 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC068339.2-201ENST00000534395 618 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC084783.1-201ENST00000565846 910 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXD4P09016 CYCSP40-201ENST00000575927 294 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 OR1AB1P-201ENST00000585564 761 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD4P09016 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD4P09016 AC103792.1-201ENST00000603591 919 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC020634.1-201ENST00000608701 549 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 MIR6716-201ENST00000613413 80 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC019080.5-201ENST00000624891 757 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AL049536.1-201ENST00000625043 744 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC068724.3-201ENST00000625906 87 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 U3.53-201ENST00000628922 216 ntBASIC4.19□□□□□ -1.74
HOXD4P09016 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD4P09016 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD4P09016 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD4P09016 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD4P09016 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD4P09016 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD4P09016 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD4P09016 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD4P09016 CASC19-284ENST00000642142 1868 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD4P09016 HSPA8P19-201ENST00000505359 1517 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC017002.4-201ENST00000604721 1525 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD4P09016 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD4P09016 OR4K17-201ENST00000315543 1032 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 RNU6-792P-201ENST00000363490 107 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 RNA5SP479-201ENST00000364858 117 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD4P09016 AC019155.1-201ENST00000382242 574 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
HOXD4P09016 RNU1-82P-201ENST00000390851 165 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AL035405.1-201ENST00000400795 710 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 HSPD1P16-201ENST00000402302 394 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD4P09016 MIR1193-201ENST00000408109 78 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 RNA5SP104-201ENST00000410989 118 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 RNA5SP39-201ENST00000411245 120 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 RANP4-201ENST00000413361 655 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD4P09016 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD4P09016 MTND2P2-201ENST00000434633 945 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 AL353748.1-201ENST00000440753 474 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC006326.1-201ENST00000445465 787 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 NUTF2P7-201ENST00000453086 375 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC079168.2-201ENST00000453977 416 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms