Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RPS11-205ENST00000599561 430 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC115621.1-201ENST00000604653 858 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RNU4-89P-201ENST00000607443 133 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC128687.2-201ENST00000609657 566 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RMST_3.1-201ENST00000611651 109 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL356585.4-201ENST00000623078 1229 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC093648.1-201ENST00000623546 606 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 CASC19-228ENST00000641414 1684 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 CKAP2P1-201ENST00000555477 2049 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC022507.1-201ENST00000548349 1505 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 KCNMB3P1-202ENST00000493696 3389 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 PPIAP24-201ENST00000328558 471 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RNU6-223P-201ENST00000362830 107 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RNU1-46P-201ENST00000384425 164 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 Y_RNA.548-201ENST00000384656 105 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 MIR1-2-201ENST00000384961 85 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AL591416.1-201ENST00000404015 867 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RNU6-1068P-201ENST00000410958 103 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC127526.1-201ENST00000417526 366 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RPS15AP30-201ENST00000420976 390 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 NMD3P2-201ENST00000421815 761 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 SPATA20P1-201ENST00000423089 438 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 OR52B5P-201ENST00000435337 951 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RPS7P3-201ENST00000443360 580 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 HMGN1P36-201ENST00000446623 298 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC104651.2-201ENST00000447549 528 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RPS20P21-201ENST00000466859 343 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 TFP1-203ENST00000490470 561 ntTSL 4 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RN7SL350P-201ENST00000492591 299 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC021146.1-201ENST00000511202 716 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RNA5SP228-201ENST00000516232 133 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RN7SKP196-201ENST00000516267 345 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 CYCSP22-201ENST00000517555 339 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC139365.2-201ENST00000517972 253 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC090572.1-201ENST00000519251 160 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 OR4R1P-201ENST00000529879 463 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 OR4P1P-201ENST00000530808 1136 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC007566.2-201ENST00000603642 413 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 AC016727.1-205ENST00000605437 569 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 MIR6070-201ENST00000613967 103 ntBASIC5.13□□□□□ -1.59
CCDC140Q96MF4 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
CCDC140Q96MF4 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms