Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 AC007068.1-201ENST00000396690 844 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 RPL21P65-201ENST00000406094 466 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 RNU4-6P-201ENST00000410804 122 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 AL356095.1-201ENST00000417217 199 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 MTND2P11-201ENST00000423638 648 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 AC115285.1-201ENST00000424879 736 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXF1Q12946 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 RPS26P15-201ENST00000488067 348 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXF1Q12946 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
FOXF1Q12946 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXF1Q12946 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.67□□□□□ -1.82
FOXF1Q12946 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXF1Q12946 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXF1Q12946 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXF1Q12946 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 AC104662.1-201ENST00000604448 511 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 MIR6867-201ENST00000610636 67 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 AL356121.2-201ENST00000624715 780 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 AC097504.1-201ENST00000515103 2415 ntBASIC3.67□□□□□ -1.82
FOXF1Q12946 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXF1Q12946 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
FOXF1Q12946 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXF1Q12946 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
FOXF1Q12946 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
FOXF1Q12946 RLIMP1-201ENST00000339626 1680 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
FOXF1Q12946 RNU1-13P-201ENST00000384499 162 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXF1Q12946 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC3.66□□□□□ -1.82
FOXF1Q12946 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXF1Q12946 VDAC1P6-201ENST00000430062 855 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXF1Q12946 ARAFP2-201ENST00000440565 559 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AC092691.2-201ENST00000461787 803 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AC104849.1-201ENST00000462623 405 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AL132838.2-201ENST00000492041 314 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 IGKV2-38-201ENST00000517443 247 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 MTND1P6-201ENST00000523621 946 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.66□□□□□ -1.82
FOXF1Q12946 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXF1Q12946 AC136624.4-201ENST00000573044 370 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXF1Q12946 AC012603.1-201ENST00000606424 528 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 MIR6868-201ENST00000611215 58 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AC131238.1-201ENST00000617135 328 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXF1Q12946 AL773545.4-201ENST00000637262 310 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AL513478.4-201ENST00000641636 310 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 AC092111.2-201ENST00000611627 1414 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXF1Q12946 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
FOXF1Q12946 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXF1Q12946 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXF1Q12946 AL929601.4-201ENST00000613011 1341 ntBASIC3.66□□□□□ -1.82
FOXF1Q12946 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXF1Q12946 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
FOXF1Q12946 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
FOXF1Q12946 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
FOXF1Q12946 SPRR2C-201ENST00000290702 219 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
FOXF1Q12946 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXF1Q12946 NIPA2P1-201ENST00000426223 976 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 RPS27AP12-201ENST00000429552 465 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 YWHAEP5-201ENST00000431545 765 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXF1Q12946 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXF1Q12946 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXF1Q12946 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXF1Q12946 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.65□□□□□ -1.83
FOXF1Q12946 AC105036.1-201ENST00000566222 271 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 AC110743.1-201ENST00000584870 478 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXF1Q12946 ZYXP1-201ENST00000617638 118 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 AC112484.5-201ENST00000624189 228 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXF1Q12946 CASC19-261ENST00000641853 1638 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 ZNF962P-201ENST00000443465 3140 ntBASIC3.65□□□□□ -1.83
FOXF1Q12946 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXF1Q12946 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
FOXF1Q12946 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.64□□□□□ -1.83
FOXF1Q12946 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
FOXF1Q12946 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms