Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC112204.1-201ENST00000502591 103 ntBASIC5.78□□□□□ -1.48
RNF4P78317 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 AC097173.1-201ENST00000505862 819 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AC114786.4-201ENST00000508771 728 ntBASIC5.78□□□□□ -1.48
RNF4P78317 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC5.78□□□□□ -1.48
RNF4P78317 AC011853.1-201ENST00000518911 454 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AP003467.2-201ENST00000520175 319 ntBASIC5.78□□□□□ -1.48
RNF4P78317 TPM3P3-201ENST00000521343 354 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 AP005639.1-201ENST00000526939 192 ntBASIC5.78□□□□□ -1.48
RNF4P78317 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.78□□□□□ -1.48
RNF4P78317 AC123904.3-201ENST00000547218 814 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 AL157687.1-201ENST00000554853 619 ntBASIC5.78□□□□□ -1.48
RNF4P78317 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 AC127024.5-201ENST00000580085 462 ntBASIC5.78□□□□□ -1.48
RNF4P78317 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC5.78□□□□□ -1.48
RNF4P78317 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 AC124916.2-201ENST00000604416 224 ntBASIC5.78□□□□□ -1.48
RNF4P78317 BCRP9-201ENST00000605312 388 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AL591167.1-201ENST00000607321 456 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AL451049.1-201ENST00000608672 497 ntBASIC5.78□□□□□ -1.48
RNF4P78317 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.78□□□□□ -1.48
RNF4P78317 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AC073593.1-201ENST00000624500 411 ntBASIC5.78□□□□□ -1.48
RNF4P78317 PISRT1-201ENST00000626175 531 ntBASIC5.78□□□□□ -1.48
RNF4P78317 MTND1P37-201ENST00000636562 264 ntBASIC5.78□□□□□ -1.48
RNF4P78317 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 AC232271.1-201ENST00000602455 2715 ntBASIC5.78□□□□□ -1.48
RNF4P78317 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.78□□□□□ -1.48
RNF4P78317 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.48
RNF4P78317 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
RNF4P78317 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 Y_RNA.1-201ENST00000352915 104 ntBASIC5.77□□□□□ -1.49
RNF4P78317 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 RNU6-877P-201ENST00000383868 107 ntBASIC5.77□□□□□ -1.49
RNF4P78317 MIR137-201ENST00000385223 102 ntBASIC5.77□□□□□ -1.49
RNF4P78317 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
RNF4P78317 RNU2-65P-201ENST00000410162 185 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 PSMD10P2-201ENST00000432890 672 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC010881.1-201ENST00000433830 235 ntBASIC5.77□□□□□ -1.49
RNF4P78317 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 AC073909.1-201ENST00000447112 999 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 OR52E7P-201ENST00000452394 933 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 HMGB1P4-201ENST00000455362 567 ntBASIC5.77□□□□□ -1.49
RNF4P78317 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 MTND1P3-201ENST00000484956 952 ntBASIC5.77□□□□□ -1.49
RNF4P78317 RN7SL170P-201ENST00000487098 295 ntBASIC5.77□□□□□ -1.49
RNF4P78317 RPL37P23-201ENST00000492641 294 ntBASIC5.77□□□□□ -1.49
RNF4P78317 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
RNF4P78317 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.77□□□□□ -1.49
RNF4P78317 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.77□□□□□ -1.49
RNF4P78317 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.77□□□□□ -1.49
RNF4P78317 AC018710.1-201ENST00000506509 158 ntBASIC5.77□□□□□ -1.49
RNF4P78317 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 MTND3P22-201ENST00000510932 243 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC090958.1-201ENST00000511122 351 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 Y_RNA.710-201ENST00000516975 110 ntBASIC5.77□□□□□ -1.49
RNF4P78317 RNA5SP400-201ENST00000517155 111 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC5.77□□□□□ -1.49
RNF4P78317 AP003122.4-201ENST00000530980 758 ntBASIC5.77□□□□□ -1.49
RNF4P78317 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.77□□□□□ -1.49
RNF4P78317 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.77□□□□□ -1.49
RNF4P78317 AL512360.1-201ENST00000555346 234 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms