Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.14□□□□□ -1.75
PKNOX1P55347 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.14□□□□□ -1.75
PKNOX1P55347 AC011155.1-201ENST00000316512 456 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PKNOX1P55347 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PKNOX1P55347 MIR331-201ENST00000362302 94 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 RN7SKP222-201ENST00000410651 315 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.14□□□□□ -1.75
PKNOX1P55347 AL356387.2-201ENST00000422272 243 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 MTND2P11-201ENST00000423638 648 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AL445528.1-201ENST00000426330 420 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 MTCO3P21-201ENST00000430791 643 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AC011998.1-201ENST00000433403 117 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AC092013.1-201ENST00000438795 332 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AL627224.1-201ENST00000448334 444 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AC073264.2-201ENST00000448886 166 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 RN7SL354P-201ENST00000469282 294 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 CDH12P2-201ENST00000504393 298 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.14□□□□□ -1.75
PKNOX1P55347 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PKNOX1P55347 AC068714.1-201ENST00000559623 800 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.14□□□□□ -1.75
PKNOX1P55347 MIMT1-201ENST00000597105 1050 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.14□□□□□ -1.75
PKNOX1P55347 AL354984.3-201ENST00000604803 325 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AP004372.1-201ENST00000604842 844 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AC067852.7-201ENST00000623270 535 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 LINC00216-201ENST00000623548 1126 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.14□□□□□ -1.75
PKNOX1P55347 AC140479.6-201ENST00000633535 357 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 AL139254.3-201ENST00000641097 674 ntBASIC4.14□□□□□ -1.75
PKNOX1P55347 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PKNOX1P55347 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
PKNOX1P55347 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PKNOX1P55347 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
PKNOX1P55347 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.14□□□□□ -1.75
PKNOX1P55347 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.13□□□□□ -1.75
PKNOX1P55347 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.13□□□□□ -1.75
PKNOX1P55347 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AC079741.1-201ENST00000321498 212 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.13□□□□□ -1.75
PKNOX1P55347 RNU6-31P-201ENST00000384388 108 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 RPL26P37-201ENST00000411983 438 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AC092647.1-201ENST00000420654 287 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AL158073.1-201ENST00000426848 1104 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 HMGB3P22-202ENST00000451823 572 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AP002345.1-201ENST00000456493 928 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 OR52A4P-201ENST00000472867 958 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 RN7SL826P-201ENST00000479724 288 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.13□□□□□ -1.75
PKNOX1P55347 RPL32P9-201ENST00000487963 407 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AL592156.1-201ENST00000508758 304 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.13□□□□□ -1.75
PKNOX1P55347 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.13□□□□□ -1.75
PKNOX1P55347 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 AC063950.1-201ENST00000552036 308 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC027176.2-201ENST00000559166 746 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC018552.3-201ENST00000567416 561 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AC068790.5-201ENST00000602741 355 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AL139286.1-201ENST00000604465 483 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC090948.2-201ENST00000607363 564 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.13□□□□□ -1.75
PKNOX1P55347 AC064801.1-201ENST00000612025 407 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC116447.1-201ENST00000613153 453 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 MIR4727-201ENST00000622232 55 ntBASIC4.13□□□□□ -1.75
PKNOX1P55347 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
PKNOX1P55347 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.13□□□□□ -1.75
PKNOX1P55347 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.13□□□□□ -1.75
PKNOX1P55347 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.13□□□□□ -1.75
PKNOX1P55347 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PKNOX1P55347 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms