Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 TATDN2P3-201ENST00000452855 3665 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 RNU6-490P-201ENST00000362985 107 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 RNU6-280P-201ENST00000364145 104 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 RNU6-378P-201ENST00000384324 107 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 UBBP1-201ENST00000392399 473 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 DSTNP4-201ENST00000399472 474 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 FDPSP5-201ENST00000399474 1057 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 AL121972.1-201ENST00000402023 252 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 CHIAP3-201ENST00000423668 1133 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 DUTP4-201ENST00000424782 475 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 RPL7L1P10-201ENST00000427790 463 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 AC091390.2-201ENST00000432573 374 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 PPIAP32-201ENST00000449940 472 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 RN7SL216P-201ENST00000471607 298 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 AC099340.1-201ENST00000475247 599 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 SNORD116.3-201ENST00000517176 78 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 BICD1-206ENST00000551086 423 ntTSL 3 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 AC104763.2-201ENST00000604179 382 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 MTND4LP5-201ENST00000605152 292 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 AC004832.4-201ENST00000608952 331 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 SDR42E1P1-201ENST00000611327 477 ntBASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC079949.2-201ENST00000617117 2933 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 USP46-202ENST00000451218 4622 ntTSL 5 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 CD86-204ENST00000469710 1604 ntTSL 2 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 RNU1-5P-201ENST00000362684 144 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 RNU6-289P-201ENST00000364093 107 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 Y_RNA.212-201ENST00000364177 102 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 Y_RNA.222-201ENST00000364264 102 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 Y_RNA.428-201ENST00000384078 102 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AL034417.1-201ENST00000399343 800 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 CYCSP17-201ENST00000407870 315 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AL139184.1-202ENST00000422303 222 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 CRYGGP-201ENST00000443337 145 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 PFN1P11-201ENST00000445829 389 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 MTND1P17-201ENST00000448961 204 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC073476.1-201ENST00000452854 407 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 RPL31P11-202ENST00000454082 372 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 RN7SL83P-201ENST00000468131 297 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 IGLVVII-41-1-201ENST00000518405 151 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 SNRPCP6-201ENST00000528310 210 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AL137161.1-201ENST00000532231 390 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 HMGN1P26-201ENST00000558737 303 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC010620.2-201ENST00000600135 313 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AL354984.3-201ENST00000604803 325 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AC018690.1-201ENST00000608144 626 ntBASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
TRIM35Q9UPQ4 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms