Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 AC000095.2-202ENST00000637415 154 ntBASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 AC004158.1-201ENST00000564508 4319 ntBASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 AL031595.2-201ENST00000624215 19071 ntBASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRIM39Q9HCM9 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 RNA5SP394-201ENST00000364216 119 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AF274854.1-201ENST00000413236 615 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 SDHDP6-201ENST00000414693 480 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC093155.2-201ENST00000420734 937 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 RPL34P3-201ENST00000421454 338 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC127526.2-201ENST00000426436 775 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 BMS1P19-201ENST00000433925 393 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC073410.1-201ENST00000435125 589 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AL512286.1-201ENST00000439244 400 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 MTCO2P3-201ENST00000442543 421 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 ST13P20-201ENST00000447996 1065 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 ARPC3P2-201ENST00000457786 533 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 RPL7P16-201ENST00000479738 738 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 HMGN2P25-201ENST00000486956 268 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AHI1-208ENST00000488690 712 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC009120.1-201ENST00000493458 473 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC079140.3-201ENST00000511111 550 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 SOD1P3-201ENST00000518682 454 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC137768.1-201ENST00000549998 553 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC126615.2-201ENST00000553003 515 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC027807.1-201ENST00000559921 996 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC107982.3-201ENST00000584957 985 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AL121873.1-201ENST00000616013 524 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 RNA5SP439-201ENST00000617595 124 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC018755.4-201ENST00000619715 454 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC099842.1-201ENST00000619919 596 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 AL158152.1-201ENST00000602652 1435 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 MTCO1P14-201ENST00000441695 1559 ntBASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
TRIM39Q9HCM9 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AP001284.1-201ENST00000528393 2118 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 MFSD8-239ENST00000641590 2479 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AL159987.1-201ENST00000347911 293 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms