Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 EOGT-210ENST00000615922 1931 ntBASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 AC003985.2-201ENST00000562268 1669 ntBASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 RNA5SP97-201ENST00000365006 84 ntBASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 VDAC1P9-201ENST00000412766 841 ntBASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 RPL23AP65-201ENST00000475608 468 ntBASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 AC022968.1-201ENST00000567372 442 ntBASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SHANK3Q9BYB0 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 NACA3P-201ENST00000359690 648 ntBASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 MIR6715A-201ENST00000615929 79 ntBASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SHANK3Q9BYB0 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 MTCO1P46-201ENST00000451639 1491 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 AC067945.1-201ENST00000342609 618 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 MIR1271-201ENST00000408537 86 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 KATNBL1P2-201ENST00000433311 835 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 AC093853.1-201ENST00000515689 483 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 AC138832.1-201ENST00000522871 556 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 NPM1P47-201ENST00000560843 856 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 RNU1-30P-201ENST00000606575 163 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 MIR7702-201ENST00000621931 59 ntBASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
SHANK3Q9BYB0 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 SOD2P1-201ENST00000396543 562 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 Z97055.1-201ENST00000419730 712 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 TCEA1P2-201ENST00000420496 906 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AL512649.1-201ENST00000428997 581 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 RPS26P2-201ENST00000440331 348 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 RPL37P3-201ENST00000456825 293 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 RPL5P24-201ENST00000463742 885 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC112206.1-201ENST00000468416 477 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC104619.4-201ENST00000510773 249 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC026782.2-201ENST00000510845 636 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC138938.1-201ENST00000515431 782 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 GNRHR2P1-201ENST00000555315 631 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 MIR4472-2-201ENST00000582069 67 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC010503.3-201ENST00000594355 540 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 SNX6P1-201ENST00000601728 1224 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC074029.4-201ENST00000624796 1859 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 PRO1804-201ENST00000623780 2050 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 RNA5SP51-201ENST00000364750 119 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 RPS23P10-201ENST00000416185 486 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC117434.1-201ENST00000419971 836 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 RNU7-143P-201ENST00000516781 65 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC063950.1-201ENST00000552036 308 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms