Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
NKX3-1Q99801 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL450326.2-201ENST00000421913 1962 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NKX3-1Q99801 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 RPL23AP59-201ENST00000399415 461 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 MIR937-201ENST00000401271 86 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 RNA5SP345-201ENST00000410646 108 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC009302.1-201ENST00000417147 390 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL590762.4-201ENST00000425885 253 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 USP12PY-201ENST00000427677 1064 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 MTCO3P21-201ENST00000430791 643 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 OR51B8P-201ENST00000449892 769 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC005229.2-201ENST00000456995 399 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 RPL23AP56-201ENST00000460778 453 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC097484.1-201ENST00000471148 389 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC022795.1-201ENST00000473808 480 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 RN7SL319P-201ENST00000480656 221 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
NKX3-1Q99801 RN7SL558P-201ENST00000497468 299 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
NKX3-1Q99801 Y_RNA.719-201ENST00000517156 106 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AP001207.2-201ENST00000519490 539 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AP000676.2-201ENST00000529711 301 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AP002812.4-201ENST00000532139 286 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 ZNF971P-201ENST00000562068 1249 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 SNORA74C-1-201ENST00000580726 201 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC011453.2-201ENST00000603737 729 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC017076.1-201ENST00000607613 578 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC093673.2-201ENST00000609674 331 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 CYCSP41-201ENST00000616920 296 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL359757.1-201ENST00000623176 255 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC015726.3-201ENST00000624501 418 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 AL590396.4-201ENST00000636779 956 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AC010300.1-201ENST00000600671 5134 ntBASIC4.13□□□□□ -1.75
NKX3-1Q99801 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
NKX3-1Q99801 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.13□□□□□ -1.75
NKX3-1Q99801 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 ZNF29P-201ENST00000225587 168 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 RNU6-178P-201ENST00000384631 104 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 MIR550A3-201ENST00000390735 95 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 MIR1303-201ENST00000408625 86 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 VN1R51P-201ENST00000411675 945 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AL139128.1-201ENST00000413921 941 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 GJA6P-201ENST00000415117 1042 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC004690.1-201ENST00000418216 328 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 RPL7P57-201ENST00000423238 740 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 MTCO2P17-201ENST00000424336 677 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 Z80107.1-201ENST00000436830 412 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 PRPF38AP2-201ENST00000438179 851 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 KNOP1P3-201ENST00000446933 426 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AL445433.1-201ENST00000457507 257 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 RPS23P1-201ENST00000491662 432 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms