Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 RNU4-79P-201ENST00000362764 141 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 Y_RNA.86-201ENST00000363020 111 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 Y_RNA.326-201ENST00000365176 113 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 LCN1P2-201ENST00000372030 223 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 Y_RNA.431-201ENST00000384086 102 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 JKAMPP1-201ENST00000413804 919 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 MTND3P17-201ENST00000416968 344 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 THEM7P-201ENST00000419556 672 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 ISCA1P6-201ENST00000427740 390 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 HMGB3P12-201ENST00000438745 556 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC044810.1-201ENST00000480271 711 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC114967.1-201ENST00000504890 259 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 Y_RNA.672-201ENST00000516289 104 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 SNORA81.2-201ENST00000516868 170 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 Y_RNA.710-201ENST00000516975 110 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 RNA5SP400-201ENST00000517155 111 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 BRD9P1-201ENST00000529855 560 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC138207.8-204ENST00000579588 527 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 RNU4ATAC-201ENST00000580972 127 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 H3F3BP2-201ENST00000583907 357 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 BCRP9-201ENST00000605312 388 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 RPSAP75-201ENST00000605848 301 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AL080312.2-201ENST00000613001 630 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 uc_338.29-201ENST00000615099 168 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AL158801.5-201ENST00000623123 465 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 MIR193BHG-214ENST00000641765 509 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 OR11H5P-202ENST00000641612 1325 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 AC009779.8-201ENST00000641684 4384 ntBASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
UBE3DQ7Z6J8 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 Y_RNA.157-201ENST00000363638 102 ntBASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 RN7SKP250-201ENST00000363924 321 ntBASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 AL139805.1-201ENST00000407837 289 ntBASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 RNU2-6P-201ENST00000411404 190 ntBASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 AC104837.2-201ENST00000427236 424 ntBASIC5.9□□□□□ -1.46
UBE3DQ7Z6J8 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms