Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 GMPSP1-201ENST00000514075 579 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
COL4A4P53420 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
COL4A4P53420 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A4P53420 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A4P53420 AC120036.2-201ENST00000509729 1474 ntBASIC4.34□□□□□ -1.71
COL4A4P53420 AC021242.1-201ENST00000507315 2035 ntBASIC4.34□□□□□ -1.71
COL4A4P53420 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A4P53420 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A4P53420 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A4P53420 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A4P53420 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
COL4A4P53420 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A4P53420 AL139247.1-201ENST00000422768 325 ntBASIC4.34□□□□□ -1.71
COL4A4P53420 RN7SL323P-201ENST00000494712 295 ntBASIC4.34□□□□□ -1.71
COL4A4P53420 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.34□□□□□ -1.71
COL4A4P53420 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.34□□□□□ -1.71
COL4A4P53420 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A4P53420 MIR7702-201ENST00000621931 59 ntBASIC4.34□□□□□ -1.71
COL4A4P53420 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.34□□□□□ -1.71
COL4A4P53420 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
COL4A4P53420 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A4P53420 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL4A4P53420 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL4A4P53420 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
COL4A4P53420 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A4P53420 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL4A4P53420 RNA5SP72-201ENST00000364442 117 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 HDGFP1-201ENST00000405943 252 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 RBMY1KP-201ENST00000423480 476 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A4P53420 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A4P53420 RPL23AP89-201ENST00000439324 255 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A4P53420 CYCSP32-201ENST00000440548 321 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 RPS4XP12-201ENST00000461747 709 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC4.33□□□□□ -1.72
COL4A4P53420 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.33□□□□□ -1.72
COL4A4P53420 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A4P53420 AC015726.1-201ENST00000602353 681 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 AC006363.1-201ENST00000603806 463 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 AL391497.1-201ENST00000608671 547 ntBASIC4.33□□□□□ -1.72
COL4A4P53420 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A4P53420 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A4P53420 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A4P53420 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A4P53420 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A4P53420 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A4P53420 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 RNU1-15P-201ENST00000353977 144 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A4P53420 RNA5SP399-201ENST00000364003 117 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 GSTM3P2-201ENST00000412746 530 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 TRIM60P17-201ENST00000415181 719 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A4P53420 AL691447.1-201ENST00000419456 387 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 AC083863.1-201ENST00000438811 231 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 OR9M1P-201ENST00000459641 921 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 RPL7P1-201ENST00000468161 747 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 RPL7P9-201ENST00000468715 747 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A4P53420 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A4P53420 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A4P53420 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A4P53420 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.32□□□□□ -1.72
COL4A4P53420 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
COL4A4P53420 AC058791.1-201ENST00000608412 3198 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
COL4A4P53420 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A4P53420 RNU1-108P-201ENST00000362556 161 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL4A4P53420 MIR30B-201ENST00000384850 88 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A4P53420 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A4P53420 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A4P53420 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 PRDX3P3-201ENST00000447765 522 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 AC022795.1-201ENST00000473808 480 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms