Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH6P52701 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH6P52701 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH6P52701 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSH6P52701 RNVU1-14-201ENST00000384770 164 ntBASIC5.72□□□□□ -1.49
MSH6P52701 GNG5P5-201ENST00000420444 220 ntBASIC5.72□□□□□ -1.49
MSH6P52701 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH6P52701 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH6P52701 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH6P52701 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.72□□□□□ -1.49
MSH6P52701 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH6P52701 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH6P52701 AC098799.1-201ENST00000504752 800 ntBASIC5.72□□□□□ -1.49
MSH6P52701 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.72□□□□□ -1.49
MSH6P52701 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
MSH6P52701 RPL23AP97-201ENST00000568955 471 ntBASIC5.72□□□□□ -1.49
MSH6P52701 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH6P52701 MIR5684-201ENST00000585074 65 ntBASIC5.72□□□□□ -1.49
MSH6P52701 AL645927.2-201ENST00000618350 349 ntBASIC5.72□□□□□ -1.49
MSH6P52701 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.72□□□□□ -1.49
MSH6P52701 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH6P52701 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH6P52701 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH6P52701 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
MSH6P52701 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
MSH6P52701 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
MSH6P52701 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
MSH6P52701 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSH6P52701 SNORA60-201ENST00000362396 134 ntBASIC5.71□□□□□ -1.5
MSH6P52701 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
MSH6P52701 MIR1179-201ENST00000408703 91 ntBASIC5.71□□□□□ -1.5
MSH6P52701 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
MSH6P52701 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.71□□□□□ -1.5
MSH6P52701 RPS26P2-201ENST00000440331 348 ntBASIC5.71□□□□□ -1.5
MSH6P52701 AC006011.1-201ENST00000442758 349 ntBASIC5.71□□□□□ -1.5
MSH6P52701 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH6P52701 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.71□□□□□ -1.5
MSH6P52701 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.71□□□□□ -1.5
MSH6P52701 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.71□□□□□ -1.5
MSH6P52701 AC005034.4-201ENST00000603612 899 ntBASIC5.71□□□□□ -1.5
MSH6P52701 AC092354.2-201ENST00000607786 514 ntBASIC5.71□□□□□ -1.5
MSH6P52701 MIR6868-201ENST00000611215 58 ntBASIC5.71□□□□□ -1.5
MSH6P52701 AC005344.1-201ENST00000613391 459 ntBASIC5.71□□□□□ -1.5
MSH6P52701 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSH6P52701 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSH6P52701 AC005086.4-201ENST00000623065 213 ntBASIC5.71□□□□□ -1.5
MSH6P52701 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.71□□□□□ -1.5
MSH6P52701 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH6P52701 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
MSH6P52701 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH6P52701 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
MSH6P52701 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH6P52701 AL022311.1-201ENST00000623726 19416 ntBASIC5.7□□□□□ -1.5
MSH6P52701 OR4K6P-201ENST00000416478 897 ntBASIC5.7□□□□□ -1.5
MSH6P52701 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH6P52701 RPS26P28-201ENST00000470806 348 ntBASIC5.7□□□□□ -1.5
MSH6P52701 RN7SL293P-201ENST00000481765 281 ntBASIC5.7□□□□□ -1.5
MSH6P52701 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH6P52701 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH6P52701 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH6P52701 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH6P52701 AC110743.1-201ENST00000584870 478 ntBASIC5.7□□□□□ -1.5
MSH6P52701 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH6P52701 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH6P52701 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH6P52701 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH6P52701 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH6P52701 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH6P52701 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.7□□□□□ -1.5
MSH6P52701 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH6P52701 OR52E6-202ENST00000379946 954 ntBASIC5.69□□□□□ -1.5
MSH6P52701 RN7SKP97-201ENST00000410966 333 ntBASIC5.69□□□□□ -1.5
MSH6P52701 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH6P52701 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH6P52701 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH6P52701 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH6P52701 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH6P52701 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH6P52701 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH6P52701 ELOCP35-201ENST00000604289 336 ntBASIC5.69□□□□□ -1.5
MSH6P52701 AC097505.1-201ENST00000610199 565 ntBASIC5.69□□□□□ -1.5
MSH6P52701 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
MSH6P52701 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH6P52701 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH6P52701 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH6P52701 AP004289.2-201ENST00000444413 1457 ntBASIC5.69□□□□□ -1.5
MSH6P52701 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH6P52701 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH6P52701 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH6P52701 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH6P52701 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH6P52701 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH6P52701 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.68□□□□□ -1.5
MSH6P52701 AC068870.3-201ENST00000625077 2536 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms