Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.29□□□□□ -1.72
SOX3P41225 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX3P41225 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX3P41225 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.29□□□□□ -1.72
SOX3P41225 AC068790.4-201ENST00000602474 263 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX3P41225 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC104763.3-201ENST00000613765 618 ntBASIC4.29□□□□□ -1.72
SOX3P41225 VN1R9P-201ENST00000614184 867 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC011472.4-201ENST00000615848 491 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC078880.5-201ENST00000617845 421 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AL359757.1-201ENST00000623176 255 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC145207.9-201ENST00000623802 325 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AP003476.1-201ENST00000623984 516 ntBASIC4.29□□□□□ -1.72
SOX3P41225 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX3P41225 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.29□□□□□ -1.72
SOX3P41225 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SOX3P41225 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
SOX3P41225 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.29□□□□□ -1.72
SOX3P41225 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 AL132640.2-201ENST00000559968 1698 ntBASIC4.29□□□□□ -1.72
SOX3P41225 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 HSPD1P14-201ENST00000432666 1618 ntBASIC4.28□□□□□ -1.72
SOX3P41225 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX3P41225 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
SOX3P41225 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX3P41225 AC104118.1-201ENST00000607625 1589 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC108467.2-201ENST00000617640 1597 ntBASIC4.28□□□□□ -1.72
SOX3P41225 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 SNORD56.4-201ENST00000363883 71 ntBASIC4.28□□□□□ -1.72
SOX3P41225 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
SOX3P41225 RPL22P22-201ENST00000395439 379 ntBASIC4.28□□□□□ -1.72
SOX3P41225 HMGB3P19-201ENST00000403971 560 ntBASIC4.28□□□□□ -1.72
SOX3P41225 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 RSL24D1P1-201ENST00000404972 493 ntBASIC4.28□□□□□ -1.72
SOX3P41225 ATF1P1-201ENST00000406040 927 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AL445183.3-201ENST00000414168 502 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.28□□□□□ -1.72
SOX3P41225 AC008173.1-201ENST00000418901 264 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC023128.2-201ENST00000420880 1223 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC005189.1-201ENST00000431286 310 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AL450263.2-201ENST00000439400 589 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX3P41225 AC104651.2-201ENST00000447549 528 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.28□□□□□ -1.72
SOX3P41225 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.28□□□□□ -1.72
SOX3P41225 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX3P41225 AK3P4-201ENST00000504283 583 ntBASIC4.28□□□□□ -1.72
SOX3P41225 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 SCARNA1-201ENST00000517138 166 ntBASIC4.28□□□□□ -1.72
SOX3P41225 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.28□□□□□ -1.72
SOX3P41225 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.28□□□□□ -1.72
SOX3P41225 AP003066.2-201ENST00000529375 555 ntBASIC4.28□□□□□ -1.72
SOX3P41225 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.28□□□□□ -1.72
SOX3P41225 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.28□□□□□ -1.72
SOX3P41225 AC015912.2-201ENST00000571053 181 ntBASIC4.28□□□□□ -1.72
SOX3P41225 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.28□□□□□ -1.72
SOX3P41225 OR1AB1P-201ENST00000585564 761 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AL133338.2-201ENST00000604292 736 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC079610.2-201ENST00000604818 690 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC245100.7-201ENST00000609678 442 ntBASIC4.28□□□□□ -1.72
SOX3P41225 RMST_10.1-201ENST00000616309 154 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC007275.1-201ENST00000621243 671 ntBASIC4.28□□□□□ -1.72
SOX3P41225 AC024023.1-201ENST00000624530 922 ntBASIC4.28□□□□□ -1.72
SOX3P41225 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 HSPD1P11-201ENST00000508643 1702 ntBASIC4.28□□□□□ -1.72
SOX3P41225 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX3P41225 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
SOX3P41225 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SOX3P41225 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
SOX3P41225 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.27□□□□□ -1.73
SOX3P41225 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.27□□□□□ -1.73
SOX3P41225 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 AL031119.1-201ENST00000404707 1879 ntBASIC4.27□□□□□ -1.73
SOX3P41225 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 BMS1P3-201ENST00000372011 932 ntBASIC4.27□□□□□ -1.73
SOX3P41225 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SOX3P41225 RN7SKP247-201ENST00000411094 308 ntBASIC4.27□□□□□ -1.73
SOX3P41225 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.27□□□□□ -1.73
SOX3P41225 CENPIP1-201ENST00000425713 902 ntBASIC4.27□□□□□ -1.73
SOX3P41225 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.27□□□□□ -1.73
SOX3P41225 DNAJC19P7-201ENST00000428811 344 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms