Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
BRCA1P38398 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
BRCA1P38398 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
BRCA1P38398 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.88□□□□□ -1.63
BRCA1P38398 SETP9-201ENST00000423837 832 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.88□□□□□ -1.63
BRCA1P38398 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.88□□□□□ -1.63
BRCA1P38398 RN7SKP57-201ENST00000517248 293 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 QTRT1P1-201ENST00000604344 1078 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 Xist_exon4.1-201ENST00000615964 126 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.88□□□□□ -1.63
BRCA1P38398 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
BRCA1P38398 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
BRCA1P38398 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
BRCA1P38398 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
BRCA1P38398 AL355596.1-201ENST00000565399 3996 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
BRCA1P38398 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.88□□□□□ -1.63
BRCA1P38398 RN7SL601P-201ENST00000471221 293 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 RPS29P2-201ENST00000479278 136 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 RNU6-513P-201ENST00000516104 104 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 RN7SKP289-201ENST00000517244 295 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 AC020914.6-201ENST00000594327 272 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 AL355365.1-201ENST00000616480 294 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 AC010809.3-201ENST00000621310 641 ntBASIC4.88□□□□□ -1.63
BRCA1P38398 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
BRCA1P38398 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.87□□□□□ -1.63
BRCA1P38398 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
BRCA1P38398 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.87□□□□□ -1.63
BRCA1P38398 Z97055.1-201ENST00000419730 712 ntBASIC4.87□□□□□ -1.63
BRCA1P38398 AL158156.1-201ENST00000422509 473 ntBASIC4.87□□□□□ -1.63
BRCA1P38398 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.87□□□□□ -1.63
BRCA1P38398 AC013410.1-201ENST00000436223 1232 ntBASIC4.87□□□□□ -1.63
BRCA1P38398 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 RPL21P23-201ENST00000446654 460 ntBASIC4.87□□□□□ -1.63
BRCA1P38398 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.87□□□□□ -1.63
BRCA1P38398 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 AC024224.1-201ENST00000538284 609 ntBASIC4.87□□□□□ -1.63
BRCA1P38398 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.87□□□□□ -1.63
BRCA1P38398 NPM1P47-201ENST00000560843 856 ntBASIC4.87□□□□□ -1.63
BRCA1P38398 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.87□□□□□ -1.63
BRCA1P38398 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.87□□□□□ -1.63
BRCA1P38398 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
BRCA1P38398 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.87□□□□□ -1.63
BRCA1P38398 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRCA1P38398 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
BRCA1P38398 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRCA1P38398 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
BRCA1P38398 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.86□□□□□ -1.63
BRCA1P38398 AC236972.1-201ENST00000433225 199 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AL133162.1-201ENST00000463228 453 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.86□□□□□ -1.63
BRCA1P38398 RNA5SP303-201ENST00000516192 130 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 DEFB109D-201ENST00000529497 240 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AC124068.1-201ENST00000563131 678 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 SNX6P1-201ENST00000601728 1224 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AC005972.3-201ENST00000606304 481 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AC022106.2-201ENST00000620114 757 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
BRCA1P38398 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
BRCA1P38398 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.86□□□□□ -1.63
BRCA1P38398 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
BRCA1P38398 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
BRCA1P38398 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRCA1P38398 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 RN7SKP186-201ENST00000365371 303 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
BRCA1P38398 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
BRCA1P38398 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 RAD23BP3-201ENST00000454157 1152 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AP000563.1-201ENST00000490865 758 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 RPS4XP18-201ENST00000495480 763 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 RN7SKP83-201ENST00000516512 178 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.86□□□□□ -1.63
BRCA1P38398 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 AC007066.2-202ENST00000566531 914 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AL078595.2-201ENST00000605309 1780 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AC092354.2-201ENST00000607786 514 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 MIR8057-201ENST00000620957 69 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 AC009229.4-201ENST00000623854 1947 ntBASIC4.86□□□□□ -1.63
BRCA1P38398 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.86□□□□□ -1.63
BRCA1P38398 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
BRCA1P38398 AP001642.1-201ENST00000624727 2117 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRCA1P38398 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.85□□□□□ -1.63
BRCA1P38398 OR5AQ1P-203ENST00000641818 1529 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 OR6K3-202ENST00000368146 996 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms