Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC007679.3-201ENST00000434035 414 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AMYP1-201ENST00000440059 1023 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 CYCSP51-201ENST00000443545 318 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 Z99127.3-201ENST00000448158 395 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 OR51B8P-201ENST00000449892 769 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 NIPA2P5-201ENST00000452282 464 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 RPL5P13-201ENST00000462840 709 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 RPL35AP19-201ENST00000469425 329 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 RPL9P6-201ENST00000492764 598 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC104971.1-201ENST00000495117 578 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 MTCYBP18-201ENST00000501056 747 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 LSM3P4-201ENST00000502948 309 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC025459.1-201ENST00000504072 156 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC090071.1-201ENST00000507713 644 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC006512.2-201ENST00000543250 486 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 MTCO1P40-201ENST00000574371 625 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AL390816.3-201ENST00000604527 1066 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AL049634.3-201ENST00000604968 457 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 MIR6793-201ENST00000612376 63 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC012414.7-202ENST00000622705 1090 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC073592.6-201ENST00000624271 415 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 FAM157B-203ENST00000639350 358 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 LYARP1-201ENST00000436977 1501 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AC027088.4-201ENST00000611559 1947 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AL359922.3-201ENST00000624779 1670 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AL359715.4-201ENST00000606629 1436 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AP004607.3-201ENST00000530354 3915 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AF287957.1-201ENST00000607368 1595 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 MIR1302-11-201ENST00000408051 138 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 MIR1302-9-201ENST00000408365 138 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 MIR1302-10-201ENST00000408734 138 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AL121878.1-201ENST00000418638 859 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC015983.1-201ENST00000441577 373 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 GDI2P2-201ENST00000445131 608 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 DPPA3P1-201ENST00000448050 469 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 CYCSP42-201ENST00000450823 238 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 ABCC13-202ENST00000463099 3842 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AL122020.1-201ENST00000472287 459 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 RBM43P1-201ENST00000476891 1081 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC011853.1-201ENST00000518911 454 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 SMARCE1P4-201ENST00000523647 241 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 MTCO3P15-201ENST00000526563 574 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC012182.1-201ENST00000570133 895 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC012254.4-201ENST00000588843 273 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 MIR1302-2-201ENST00000607096 138 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC009779.8-202ENST00000607990 932 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC002553.4-201ENST00000616896 331 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC025048.6-202ENST00000627667 438 ntBASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 CGA-206ENST00000630630 832 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC39Q9UFE4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 148.3 ms