Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 OR55B1P-203ENST00000641518 2602 ntBASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 AL049737.1-201ENST00000413920 1403 ntBASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.12□□□□□ -1.59
PTCHD3Q3KNS1 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL355852.1-201ENST00000454081 1771 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC006484.1-201ENST00000435086 1884 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC112198.2-201ENST00000426589 6996 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 HMGB1P5-201ENST00000255320 642 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 U8.4-201ENST00000363626 134 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 RPL12P9-201ENST00000412942 488 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 PTP4A1P5-201ENST00000420305 455 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 USP9YP26-201ENST00000421008 661 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 VN1R108P-201ENST00000431580 830 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 CLUHP1-201ENST00000435012 1190 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL445567.1-201ENST00000439121 144 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC108161.1-201ENST00000461060 402 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 RPL23AP12-201ENST00000467573 473 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 RPS3AP43-201ENST00000479743 781 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 RPSAP50-201ENST00000481955 852 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 VPS26AP1-201ENST00000483197 979 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 NDUFA5P12-201ENST00000503796 343 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC116353.3-201ENST00000511215 249 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC138832.1-201ENST00000522871 556 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 OR4C2P-201ENST00000530855 1064 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC127381.1-201ENST00000555979 939 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 NDUFAF4P1-201ENST00000559425 519 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 VN1R84P-201ENST00000593697 235 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AL022161.1-201ENST00000604390 213 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC122108.2-201ENST00000611946 526 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AC011939.3-201ENST00000613686 466 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 MIR7155-201ENST00000615925 56 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 uc_338.9-201ENST00000617424 182 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 SGO1P2-201ENST00000429458 1589 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 AP000776.1-201ENST00000530032 1663 ntBASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
PTCHD3Q3KNS1 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
PTCHD3Q3KNS1 RNU6-249P-201ENST00000363016 102 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms