Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RPS29P4-201ENST00000414733 161 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC2.81□□□□□ -1.96
PRKDCP78527 FABP3P2-201ENST00000453169 399 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 NACA-211ENST00000548563 827 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 AL390838.2-201ENST00000602394 274 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 MIR7111-201ENST00000619751 72 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 VPS35P1-201ENST00000563400 1518 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 CA1-225ENST00000626824 2405 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 SNORD17-201ENST00000390930 237 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 AC006511.1-201ENST00000470614 315 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC2.81□□□□□ -1.96
PRKDCP78527 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 AL391497.1-201ENST00000608671 547 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 RNA5SP439-201ENST00000617595 124 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 AC119674.1-207ENST00000641355 633 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 CCAT2-201ENST00000630920 1752 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
PRKDCP78527 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
PRKDCP78527 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
PRKDCP78527 SNORA60-201ENST00000362396 134 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC2.8□□□□□ -1.96
PRKDCP78527 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC2.8□□□□□ -1.96
PRKDCP78527 RAD23BP3-201ENST00000454157 1152 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC2.8□□□□□ -1.96
PRKDCP78527 QTRT1P1-201ENST00000604344 1078 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 MIR432-201ENST00000606207 94 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 RNU6-729P-201ENST00000384399 107 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 GSTA8P-201ENST00000404253 637 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 ZNF736P2Y-201ENST00000416040 1279 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 ZYG11AP1-201ENST00000430329 837 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 OR52Y1P-201ENST00000452418 828 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 IGKV2-38-201ENST00000517443 247 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 COX6B1P6-201ENST00000522347 255 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 CASC19-203ENST00000523510 575 ntTSL 3 BASIC2.8□□□□□ -1.96
PRKDCP78527 AL353726.1-201ENST00000614041 1000 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC2.8□□□□□ -1.96
PRKDCP78527 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 AC068870.3-201ENST00000625077 2536 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC2.8□□□□□ -1.96
PRKDCP78527 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 RNA5SP293-201ENST00000410527 113 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.8□□□□□ -1.96
PRKDCP78527 DDX39BP2-208ENST00000453923 258 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 AC011825.1-201ENST00000484967 388 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 AC092747.2-201ENST00000545069 983 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC2.8□□□□□ -1.96
PRKDCP78527 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 SNX6P1-201ENST00000601728 1224 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
PRKDCP78527 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 AL591135.1-201ENST00000401578 5914 ntBASIC2.8□□□□□ -1.96
PRKDCP78527 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC2.8□□□□□ -1.96
PRKDCP78527 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC2.8□□□□□ -1.96
PRKDCP78527 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
PRKDCP78527 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
PRKDCP78527 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC2.79□□□□□ -1.96
PRKDCP78527 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.79□□□□□ -1.96
PRKDCP78527 AC009506.2-201ENST00000420635 840 ntBASIC2.79□□□□□ -1.96
PRKDCP78527 BX276092.4-201ENST00000452056 248 ntBASIC2.79□□□□□ -1.96
PRKDCP78527 KC877373.1-201ENST00000479066 408 ntBASIC2.79□□□□□ -1.96
PRKDCP78527 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.79□□□□□ -1.96
PRKDCP78527 AC027176.2-201ENST00000559166 746 ntBASIC2.79□□□□□ -1.96
PRKDCP78527 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
PRKDCP78527 AL355365.1-201ENST00000616480 294 ntBASIC2.79□□□□□ -1.96
PRKDCP78527 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.79□□□□□ -1.96
PRKDCP78527 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
PRKDCP78527 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms