Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC007599.1-201ENST00000568688 1174 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A4P53420 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AC005255.1-201ENST00000593748 216 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AL049634.3-201ENST00000604968 457 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 AC138907.10-201ENST00000623708 983 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.38□□□□□ -1.71
COL4A4P53420 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 AC004656.1-201ENST00000568479 4951 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 AC073346.2-201ENST00000624724 2058 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.37□□□□□ -1.71
COL4A4P53420 PTMAP5-201ENST00000393073 333 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 RPL21P17-201ENST00000397467 475 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 EIF4EP1-201ENST00000422311 642 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 EIF1P3-201ENST00000423841 334 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 HSFY1P1-201ENST00000423928 1178 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 AC073335.1-201ENST00000427776 363 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.37□□□□□ -1.71
COL4A4P53420 MAPRE1P3-201ENST00000435438 796 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A4P53420 AC025554.1-201ENST00000505641 188 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A4P53420 AC027176.2-201ENST00000559166 746 ntBASIC4.37□□□□□ -1.71
COL4A4P53420 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A4P53420 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A4P53420 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A4P53420 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A4P53420 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
COL4A4P53420 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A4P53420 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A4P53420 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A4P53420 FCF1P7-201ENST00000451185 558 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A4P53420 SETP6-201ENST00000479329 568 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AC006517.1-201ENST00000480485 328 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A4P53420 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A4P53420 AC016550.3-201ENST00000515706 767 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 SNORA70.24-201ENST00000517233 118 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A4P53420 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A4P53420 AC106782.4-201ENST00000568264 210 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 MTND6P33-201ENST00000571794 183 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AC005412.1-201ENST00000580812 1049 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AP001542.1-201ENST00000591314 200 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.36□□□□□ -1.71
COL4A4P53420 AL353600.1-201ENST00000608148 251 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AL442067.2-201ENST00000614033 363 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AC055839.1-201ENST00000634467 498 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 AC023632.6-201ENST00000624338 2177 ntBASIC4.36□□□□□ -1.71
COL4A4P53420 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A4P53420 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A4P53420 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A4P53420 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 HSPE1P16-201ENST00000426640 348 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 AL159987.2-201ENST00000432754 307 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A4P53420 KRT19P6-201ENST00000510983 209 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A4P53420 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A4P53420 QTRT1P1-201ENST00000604344 1078 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 AC016957.2-201ENST00000616998 848 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 LINC00561-201ENST00000565815 2738 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 DMD-211ENST00000378707 7410 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A4P53420 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A4P53420 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A4P53420 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A4P53420 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A4P53420 AL358472.1-201ENST00000431295 329 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
COL4A4P53420 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.35□□□□□ -1.71
COL4A4P53420 RPL12P18-201ENST00000437175 325 ntBASIC4.35□□□□□ -1.71
COL4A4P53420 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 179.3 ms