Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL11A1P12107 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL11A1P12107 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL11A1P12107 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.54□□□□□ -1.68
COL11A1P12107 HSPE1P16-201ENST00000426640 348 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.54□□□□□ -1.68
COL11A1P12107 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.54□□□□□ -1.68
COL11A1P12107 BTG4P1-201ENST00000510421 183 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.54□□□□□ -1.68
COL11A1P12107 NDUFA5P2-201ENST00000519723 344 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.54□□□□□ -1.68
COL11A1P12107 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL11A1P12107 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.54□□□□□ -1.68
COL11A1P12107 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.54□□□□□ -1.68
COL11A1P12107 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.54□□□□□ -1.68
COL11A1P12107 AL606490.9-201ENST00000603331 271 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 AC073530.2-201ENST00000623987 261 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 AC006971.1-201ENST00000407916 4486 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL11A1P12107 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.54□□□□□ -1.68
COL11A1P12107 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL11A1P12107 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL11A1P12107 AL035425.3-201ENST00000564206 4996 ntBASIC4.54□□□□□ -1.68
COL11A1P12107 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 SNORD35B-201ENST00000363660 87 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 SNORA11C-201ENST00000408532 129 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 SEPT7P8-201ENST00000413308 775 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 AC018644.1-201ENST00000429934 551 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 RPL23AP89-201ENST00000439324 255 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 GEMIN8P3-201ENST00000445417 720 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.53□□□□□ -1.68
COL11A1P12107 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.53□□□□□ -1.68
COL11A1P12107 ARL4AP1-201ENST00000503220 705 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 DUXAP2-201ENST00000519198 589 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC103968.1-201ENST00000557841 573 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC244505.7-201ENST00000599675 272 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 SNX6P1-201ENST00000601728 1224 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC026979.4-201ENST00000606555 645 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 SNORD91B-202ENST00000608459 222 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC096577.2-201ENST00000611455 153 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
COL11A1P12107 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.53□□□□□ -1.68
COL11A1P12107 AC007066.1-201ENST00000392902 381 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 RPL21P17-201ENST00000397467 475 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 PGBD4P8-201ENST00000412993 562 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.53□□□□□ -1.68
COL11A1P12107 RN7SKP157-201ENST00000516174 282 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 RNU7-143P-201ENST00000516781 65 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.53□□□□□ -1.68
COL11A1P12107 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.53□□□□□ -1.68
COL11A1P12107 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.53□□□□□ -1.68
COL11A1P12107 AC093524.1-201ENST00000564266 1094 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC016839.1-201ENST00000578162 867 ntBASIC4.53□□□□□ -1.68
COL11A1P12107 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.53□□□□□ -1.68
COL11A1P12107 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.53□□□□□ -1.68
COL11A1P12107 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.53□□□□□ -1.68
COL11A1P12107 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL11A1P12107 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.53□□□□□ -1.68
COL11A1P12107 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL11A1P12107 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL11A1P12107 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
COL11A1P12107 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
COL11A1P12107 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL11A1P12107 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
COL11A1P12107 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.52□□□□□ -1.69
COL11A1P12107 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.52□□□□□ -1.69
COL11A1P12107 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL11A1P12107 MIR7-3-201ENST00000384898 110 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 SNORA57.3-201ENST00000411095 141 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 DYNLL1P7-201ENST00000429273 258 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 RPS3AP12-201ENST00000443616 753 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 RANP8-201ENST00000444720 713 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.52□□□□□ -1.69
COL11A1P12107 AC006499.5-201ENST00000505037 514 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.52□□□□□ -1.69
COL11A1P12107 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.52□□□□□ -1.69
COL11A1P12107 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.52□□□□□ -1.69
COL11A1P12107 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
COL11A1P12107 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL11A1P12107 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
COL11A1P12107 AC006484.1-201ENST00000435086 1884 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 AC006042.3-201ENST00000454684 1469 ntBASIC4.52□□□□□ -1.69
COL11A1P12107 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL11A1P12107 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms