Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MIR3934-201ENST00000579806 107 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 PRPF19P1-201ENST00000584766 898 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AP001269.3-201ENST00000588718 329 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AC006116.3-201ENST00000592968 361 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AL158163.2-201ENST00000619110 700 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 MIR1322-201ENST00000638013 71 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AC073136.1-201ENST00000449426 2884 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4AQ9UN37 AC011493.1-201ENST00000596753 1632 ntBASIC5.08□□□□□ -1.6
VPS4AQ9UN37 CASC19-284ENST00000642142 1868 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 TRIM51GP-201ENST00000534741 1350 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 OR5H2-201ENST00000355273 945 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 SNORD116.1-201ENST00000365628 92 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 CASP3-203ENST00000393588 677 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 RPL21P67-201ENST00000402896 478 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AL008987.1-201ENST00000415528 237 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 OR4K6P-201ENST00000416478 897 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 VDAC1P6-201ENST00000430062 855 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC005002.1-201ENST00000447458 540 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 Z99714.1-201ENST00000450463 807 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 DNAJB5P1-201ENST00000454004 806 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 USP9YP25-201ENST00000457708 443 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC113347.3-201ENST00000509113 148 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC138938.1-201ENST00000515431 782 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 IGKV2D-10-201ENST00000520194 281 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC027369.5-201ENST00000533838 755 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC126177.5-201ENST00000549599 178 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC127024.5-201ENST00000580085 462 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 MIR4666A-201ENST00000580160 79 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC011840.5-201ENST00000582125 771 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 MIR4697-201ENST00000582977 78 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC009948.4-201ENST00000604692 675 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 TAS2R6P-201ENST00000605022 826 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 VN1R74P-201ENST00000613259 503 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AC108359.1-201ENST00000616451 1211 ntBASIC5.07□□□□□ -1.6
VPS4AQ9UN37 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4AQ9UN37 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 RNU6-83P-201ENST00000384568 112 ntBASIC5.06□□□□□ -1.6
VPS4AQ9UN37 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 COX5BP7-201ENST00000414780 274 ntBASIC5.06□□□□□ -1.6
VPS4AQ9UN37 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS4AQ9UN37 AL365338.1-201ENST00000422282 858 ntBASIC5.06□□□□□ -1.6
VPS4AQ9UN37 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms