Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 WBP1LP3-201ENST00000523033 208 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC124947.2-202ENST00000552735 133 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 MIR6809-201ENST00000612189 116 ntBASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC39Q9UFE4 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 RNU4-91P-201ENST00000364778 135 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AL133482.1-201ENST00000415988 498 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 PNRC2P1-201ENST00000423940 420 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 DEFA9P-201ENST00000433042 285 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 CDC42P1-201ENST00000456658 548 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 RNA5SP269-201ENST00000459032 137 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 OR9M1P-201ENST00000459641 921 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC146507.1-201ENST00000468335 354 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC011979.1-201ENST00000472300 483 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 MTCO1P35-201ENST00000515270 228 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 SCARNA18.1-201ENST00000516330 83 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 MIR4776-2-201ENST00000580204 80 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 LLPHP1-201ENST00000603571 367 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 Y_RNA.812-201ENST00000610788 101 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AL592148.2-201ENST00000612210 372 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 Y_RNA.784-201ENST00000613803 101 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 Y_RNA.787-201ENST00000616522 101 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 Y_RNA.780-201ENST00000617336 101 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 Y_RNA.801-201ENST00000619005 101 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC002550.2-201ENST00000621246 394 ntBASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC39Q9UFE4 OR10AB1P-202ENST00000641219 1686 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AP001284.1-201ENST00000528393 2118 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 LINC02019-201ENST00000608605 2060 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 OR10J6P-201ENST00000289731 930 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 RNU6-931P-201ENST00000363850 107 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 SUGT1P2-201ENST00000379452 992 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 AL034379.1-201ENST00000423216 253 ntBASIC6.58□□□□□ -1.36
CCDC39Q9UFE4 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms