Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL450263.2-201ENST00000439400 589 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 MTCYBP21-201ENST00000443300 1113 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 HMGB1P26-201ENST00000452520 628 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC009963.2-201ENST00000453431 138 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC008379.1-201ENST00000463655 464 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AP000942.1-201ENST00000463969 747 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC112198.4-201ENST00000515450 351 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AL137072.1-201ENST00000603444 466 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC005191.1-201ENST00000603950 358 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AL133338.2-201ENST00000604292 736 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC011374.2-201ENST00000607135 526 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AC145207.9-201ENST00000623802 325 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 OR52H1-202ENST00000641796 1061 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AL359922.3-201ENST00000624779 1670 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 OR4K17-201ENST00000315543 1032 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 RNU6-532P-201ENST00000384318 107 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 MIR320B1-201ENST00000390209 79 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 Z98745.1-201ENST00000402553 494 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 UBE2V1P11-201ENST00000411559 285 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 OR13Z1P-201ENST00000416141 834 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 RGS17P1-201ENST00000423358 553 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 PNRC2P1-201ENST00000423940 420 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC234779.1-201ENST00000425910 285 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 MTCO1P52-201ENST00000433928 531 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 CYCSP20-201ENST00000473154 315 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC090686.1-201ENST00000481577 749 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC069304.1-201ENST00000491593 704 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 MTND4LP2-201ENST00000502312 285 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC133963.2-201ENST00000513686 578 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 SNORA31.13-201ENST00000516624 135 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC084783.1-201ENST00000565846 910 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC008782.1-201ENST00000603386 430 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 BNIP3P31-201ENST00000604515 566 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 AC024933.1-201ENST00000608472 348 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 U3.53-201ENST00000628922 216 ntBASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC3Q9BQI4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AL034370.1-201ENST00000397254 1590 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 MFSD8-213ENST00000641134 1327 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 MIR16-2-201ENST00000362117 81 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms