Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC022893.2-201ENST00000564832 3296 ntBASIC1.3□□□□□ -2.2
SYNE1Q8NF91 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 AL078595.2-201ENST00000605309 1780 ntBASIC1.3□□□□□ -2.2
SYNE1Q8NF91 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 HPRT1P2-201ENST00000505250 544 ntBASIC1.3□□□□□ -2.2
SYNE1Q8NF91 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SYNE1Q8NF91 AC018529.3-201ENST00000624212 2254 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RNU6-213P-201ENST00000384051 104 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MIR634-201ENST00000385208 97 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RNA5SP36-201ENST00000410197 133 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL445584.1-201ENST00000431451 330 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC006326.1-201ENST00000445465 787 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC090312.1-201ENST00000580637 348 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC113403.1-201ENST00000604910 193 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 OR7M1P-201ENST00000608946 533 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC010329.2-201ENST00000595195 2737 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RN7SKP97-201ENST00000410966 333 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 Z74696.2-201ENST00000436514 498 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC025518.1-201ENST00000479856 347 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MIR4286-201ENST00000580651 93 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL122125.1-201ENST00000616999 600 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL645927.2-201ENST00000618350 349 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC027228.2-201ENST00000567141 2154 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MIR195-201ENST00000385194 87 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RPL23AP38-201ENST00000423801 469 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 YY1P1-201ENST00000427625 668 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 DPRXP4-201ENST00000578053 568 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC006116.5-201ENST00000591936 559 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MIMT1-201ENST00000597105 1050 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC099654.11-201ENST00000638857 294 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 EIF2AP4-201ENST00000424793 1781 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL592182.3-201ENST00000642132 3304 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PVALB-202ENST00000404171 422 ntTSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC124068.1-201ENST00000563131 678 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC007179.3-201ENST00000604976 235 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 BNIP3P10-201ENST00000605360 577 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 OFD1P5Y-201ENST00000447585 2590 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 NAP1L4P1-201ENST00000319092 1157 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RPL7P33-201ENST00000444159 742 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RPL5P32-201ENST00000454085 879 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC112206.1-201ENST00000468416 477 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RAD21-204ENST00000518055 896 ntTSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 TVP23BP1-201ENST00000557500 617 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MIR5195-201ENST00000583555 115 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 SNORD91B-202ENST00000608459 222 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms