Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC103591.2-201ENST00000265259 766 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 SNURFL-201ENST00000309296 343 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 RNU6-356P-201ENST00000384140 107 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 MIR921-201ENST00000401133 56 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 RN7SKP114-201ENST00000410327 279 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 TCEA1P4-201ENST00000415066 844 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 MTCO3P4-201ENST00000419236 787 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC093414.1-201ENST00000434712 514 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 PRPF38AP2-201ENST00000438179 851 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 KNOP1P3-201ENST00000446933 426 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC104651.2-201ENST00000447549 528 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 NDUFA5P8-201ENST00000449019 346 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 TCEA1P1-201ENST00000449716 880 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 RPL23AP65-201ENST00000475608 468 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 Vault.1-201ENST00000516474 102 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 RN7SKP234-201ENST00000517173 224 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 RNU6-709P-201ENST00000517257 104 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 TOMM20P2-201ENST00000540082 421 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC025260.1-201ENST00000548858 430 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 OR11J2P-201ENST00000555298 907 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC090751.1-201ENST00000566966 267 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 RPL26P30-202ENST00000602923 645 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC078899.5-201ENST00000612475 178 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 AC022079.2-201ENST00000619739 566 ntBASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.39□□□□□ -1.71
ZNF540Q8NDQ6 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 NMD3P1-201ENST00000439704 1488 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 OR52E6-202ENST00000379946 954 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 MIR3074-201ENST00000384885 81 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AL109941.1-201ENST00000401925 229 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC004987.3-201ENST00000413879 771 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC097499.1-201ENST00000444277 208 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 SCARNA10-201ENST00000459255 330 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 RPS20P21-201ENST00000466859 343 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC108022.1-201ENST00000493466 478 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 RNA5SP392-201ENST00000516905 112 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 NOP56P3-201ENST00000549457 385 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC067805.1-201ENST00000559344 470 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AP000919.1-202ENST00000581139 1264 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 MIR4436B2-201ENST00000581415 91 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 MIR4436B1-201ENST00000583272 91 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 VN1R79P-201ENST00000593540 513 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 MIR6820-201ENST00000611508 62 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 MIR6798-201ENST00000612887 67 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC100827.5-201ENST00000615883 426 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 SNX18P1Y-201ENST00000616231 511 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AL445528.2-201ENST00000620582 470 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AC011815.3-201ENST00000624194 473 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms