Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL4A4P53420 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
COL4A4P53420 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.4□□□□□ -1.7
COL4A4P53420 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
COL4A4P53420 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.4□□□□□ -1.71
COL4A4P53420 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 RNU6-213P-201ENST00000384051 104 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 MIR1179-201ENST00000408703 91 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A4P53420 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.4□□□□□ -1.71
COL4A4P53420 TMX2P1-201ENST00000436507 708 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A4P53420 PSMC1P13-201ENST00000458195 985 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 AC008155.2-201ENST00000464337 397 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 AC012158.1-204ENST00000483430 465 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 AL139099.1-201ENST00000497398 403 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 AC074250.1-201ENST00000511117 192 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.4□□□□□ -1.71
COL4A4P53420 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.4□□□□□ -1.71
COL4A4P53420 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.4□□□□□ -1.71
COL4A4P53420 MIR5684-201ENST00000585074 65 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 OR7M1P-201ENST00000608946 533 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 NCOA4P2-201ENST00000340589 1813 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A4P53420 AL049781.1-201ENST00000623195 3585 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
COL4A4P53420 MAPK10-253ENST00000641010 4072 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 ERCC6-202ENST00000374127 1782 ntBASIC4.4□□□□□ -1.71
COL4A4P53420 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A4P53420 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.71
COL4A4P53420 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL4A4P53420 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A4P53420 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
COL4A4P53420 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A4P53420 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A4P53420 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A4P53420 AC007066.1-201ENST00000392902 381 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 Z92545.1-201ENST00000411782 234 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.39□□□□□ -1.71
COL4A4P53420 OR4F13P-201ENST00000428478 931 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 CAB39P1-201ENST00000502277 460 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A4P53420 YPEL5P3-201ENST00000547227 352 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 AC069240.1-201ENST00000548774 375 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A4P53420 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A4P53420 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.39□□□□□ -1.71
COL4A4P53420 AL606490.9-201ENST00000603331 271 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 U3.45-201ENST00000607547 219 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 OR2BH1P-201ENST00000608850 864 ntBASIC4.39□□□□□ -1.71
COL4A4P53420 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.39□□□□□ -1.71
COL4A4P53420 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A4P53420 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A4P53420 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC4.39□□□□□ -1.71
COL4A4P53420 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A4P53420 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A4P53420 VPS35P1-201ENST00000563400 1518 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 ATP5F1P4-201ENST00000397288 746 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 VDAC2P1-201ENST00000399358 958 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 RPS23P10-201ENST00000416185 486 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AC245052.5-201ENST00000416320 649 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A4P53420 PPIAP3-201ENST00000450588 505 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AC007967.1-201ENST00000455422 1159 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A4P53420 HPRT1P2-201ENST00000505250 544 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 ZNF415P1-201ENST00000582279 1166 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A4P53420 AC096553.1-201ENST00000605169 829 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A4P53420 AL034408.1-202ENST00000636088 415 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.38□□□□□ -1.71
COL4A4P53420 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL4A4P53420 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.38□□□□□ -1.71
COL4A4P53420 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A4P53420 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A4P53420 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.38□□□□□ -1.71
COL4A4P53420 AC006011.1-201ENST00000442758 349 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AC115115.1-201ENST00000449927 248 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 PLGLA-201ENST00000465668 449 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 RPS20P21-201ENST00000466859 343 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AC018635.1-201ENST00000468292 1030 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 OR8I1P-201ENST00000529291 931 ntBASIC4.38□□□□□ -1.71
COL4A4P53420 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A4P53420 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.38□□□□□ -1.71
COL4A4P53420 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.38□□□□□ -1.71
COL4A4P53420 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A4P53420 RPL21P12-201ENST00000559810 515 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms