Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC084783.1-201ENST00000565846 910 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.14□□□□□ -1.75
SDC1P18827 RPL26P30-202ENST00000602923 645 ntBASIC4.14□□□□□ -1.75
SDC1P18827 AC133552.5-201ENST00000604266 540 ntBASIC4.14□□□□□ -1.75
SDC1P18827 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC1P18827 MIR6780A-201ENST00000615089 68 ntBASIC4.14□□□□□ -1.75
SDC1P18827 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.14□□□□□ -1.75
SDC1P18827 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC1P18827 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 DHX40P1-201ENST00000588725 1412 ntBASIC4.13□□□□□ -1.75
SDC1P18827 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 AL592148.3-201ENST00000608771 2646 ntBASIC4.13□□□□□ -1.75
SDC1P18827 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 RAD17P1-201ENST00000418130 2042 ntBASIC4.13□□□□□ -1.75
SDC1P18827 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 OR4K15-201ENST00000305051 1216 ntBASIC4.13□□□□□ -1.75
SDC1P18827 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 MIR320B1-201ENST00000390209 79 ntBASIC4.13□□□□□ -1.75
SDC1P18827 TMSB10P2-201ENST00000416049 131 ntBASIC4.13□□□□□ -1.75
SDC1P18827 ARL2BPP3-201ENST00000421226 480 ntBASIC4.13□□□□□ -1.75
SDC1P18827 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.13□□□□□ -1.75
SDC1P18827 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 AL390879.2-203ENST00000426943 1121 ntBASIC4.13□□□□□ -1.75
SDC1P18827 FTH1P16-201ENST00000435241 552 ntBASIC4.13□□□□□ -1.75
SDC1P18827 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC1P18827 AL353718.1-201ENST00000451028 517 ntBASIC4.13□□□□□ -1.75
SDC1P18827 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 AL513533.1-201ENST00000453728 415 ntBASIC4.13□□□□□ -1.75
SDC1P18827 MTND2P6-201ENST00000455337 1030 ntBASIC4.13□□□□□ -1.75
SDC1P18827 RPL7AP52-201ENST00000458096 790 ntBASIC4.13□□□□□ -1.75
SDC1P18827 RPL35AP28-201ENST00000459730 331 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC1P18827 RPL7P22-201ENST00000466005 733 ntBASIC4.13□□□□□ -1.75
SDC1P18827 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 AC108729.2-201ENST00000476543 840 ntBASIC4.13□□□□□ -1.75
SDC1P18827 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC1P18827 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC1P18827 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC1P18827 AC108120.2-201ENST00000512973 294 ntBASIC4.13□□□□□ -1.75
SDC1P18827 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.13□□□□□ -1.75
SDC1P18827 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.13□□□□□ -1.75
SDC1P18827 AC004923.2-201ENST00000529649 369 ntBASIC4.13□□□□□ -1.75
SDC1P18827 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 AC069240.1-201ENST00000548774 375 ntBASIC4.13□□□□□ -1.75
SDC1P18827 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC1P18827 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.13□□□□□ -1.75
SDC1P18827 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.13□□□□□ -1.75
SDC1P18827 AC135178.6-201ENST00000605314 398 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AC023813.4-201ENST00000607580 580 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AL021707.7-201ENST00000607991 416 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AL096803.3-201ENST00000609032 532 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AC012409.3-201ENST00000611343 981 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AL161616.1-201ENST00000611867 286 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AL049539.1-201ENST00000611964 459 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AL021997.2-201ENST00000615674 271 ntBASIC4.13□□□□□ -1.75
SDC1P18827 SNX18P1Y-201ENST00000616231 511 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AL158196.1-201ENST00000616786 434 ntBASIC4.13□□□□□ -1.75
SDC1P18827 AP005019.3-201ENST00000620418 560 ntBASIC4.13□□□□□ -1.75
SDC1P18827 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
SDC1P18827 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC1P18827 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 AC024341.1-201ENST00000526444 1552 ntBASIC4.13□□□□□ -1.75
SDC1P18827 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC1P18827 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC1P18827 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.13□□□□□ -1.75
SDC1P18827 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC1P18827 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 MFSD8-242ENST00000641690 4199 ntBASIC4.12□□□□□ -1.75
SDC1P18827 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.12□□□□□ -1.75
SDC1P18827 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 RNU2-50P-201ENST00000410494 143 ntBASIC4.12□□□□□ -1.75
SDC1P18827 OR2X1P-201ENST00000421144 687 ntBASIC4.12□□□□□ -1.75
SDC1P18827 RBMY1KP-201ENST00000423480 476 ntBASIC4.12□□□□□ -1.75
SDC1P18827 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.12□□□□□ -1.75
SDC1P18827 RPEP3-201ENST00000425462 676 ntBASIC4.12□□□□□ -1.75
SDC1P18827 DPY19L1P2-201ENST00000426647 915 ntBASIC4.12□□□□□ -1.75
SDC1P18827 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.12□□□□□ -1.75
SDC1P18827 AL513321.1-201ENST00000441175 761 ntBASIC4.12□□□□□ -1.75
SDC1P18827 ARL2BPP10-201ENST00000446487 531 ntBASIC4.12□□□□□ -1.75
SDC1P18827 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.12□□□□□ -1.75
SDC1P18827 AC073264.2-201ENST00000448886 166 ntBASIC4.12□□□□□ -1.75
SDC1P18827 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.12□□□□□ -1.75
SDC1P18827 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.12□□□□□ -1.75
SDC1P18827 OR52A4P-201ENST00000472867 958 ntBASIC4.12□□□□□ -1.75
SDC1P18827 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.12□□□□□ -1.75
SDC1P18827 AC104164.2-201ENST00000496953 495 ntBASIC4.12□□□□□ -1.75
SDC1P18827 HMGB3P13-201ENST00000511263 607 ntBASIC4.12□□□□□ -1.75
SDC1P18827 AC108471.1-201ENST00000513977 287 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms