Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ZNF663P-202ENST00000641770 1131 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL6A1P12109 CR381670.1-201ENST00000624291 1693 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 AC092079.1-201ENST00000558620 1985 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC6.03□□□□□ -1.44
COL6A1P12109 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC068769.1-201ENST00000474767 2426 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC005832.2-201ENST00000538921 1430 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 THAP12P4-201ENST00000528321 2266 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL6A1P12109 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL6A1P12109 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL6A1P12109 RN7SKP113-201ENST00000363891 295 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 RNA5SP91-201ENST00000390902 119 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 RNU6ATAC25P-201ENST00000408798 117 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 COX6B1P1-201ENST00000415962 213 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC006366.1-201ENST00000422002 759 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC073410.1-201ENST00000435125 589 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A1P12109 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC092013.1-201ENST00000438795 332 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A1P12109 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A1P12109 GAPDHP25-201ENST00000447061 1001 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC6.03□□□□□ -1.44
COL6A1P12109 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC010460.1-201ENST00000507087 466 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 MTND6P2-201ENST00000512226 524 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 RNU6-720P-201ENST00000516363 108 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 SEPT10P1-201ENST00000517342 1162 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC008033.2-201ENST00000542626 177 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.03□□□□□ -1.44
COL6A1P12109 AF131215.7-201ENST00000602443 707 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC068790.4-201ENST00000602474 263 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AL357078.3-201ENST00000607528 618 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AL133481.2-203ENST00000607558 139 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 U6atac.1-201ENST00000616025 117 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC139769.3-201ENST00000618383 175 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC099842.1-201ENST00000619919 596 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC015804.1-201ENST00000622935 435 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AC091932.2-201ENST00000623014 291 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC6.03□□□□□ -1.44
COL6A1P12109 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.03□□□□□ -1.44
COL6A1P12109 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 AP005435.3-201ENST00000531260 3198 ntBASIC6.03□□□□□ -1.44
COL6A1P12109 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
COL6A1P12109 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.03□□□□□ -1.44
COL6A1P12109 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A1P12109 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.44
COL6A1P12109 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
COL6A1P12109 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.02□□□□□ -1.44
COL6A1P12109 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
COL6A1P12109 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 ANKRD20A17P-201ENST00000511745 1330 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL6A1P12109 MTCO1P18-201ENST00000455518 1419 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A1P12109 SNORA62-201ENST00000365493 153 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC6.02□□□□□ -1.45
COL6A1P12109 RNU6-398P-201ENST00000384143 109 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 RNU6-1215P-201ENST00000384441 102 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 VDAC2P1-201ENST00000399358 958 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 PEX12P1-201ENST00000400284 1048 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL6A1P12109 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A1P12109 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC016712.1-201ENST00000431088 378 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A1P12109 AC008072.1-201ENST00000434254 824 ntBASIC6.02□□□□□ -1.45
COL6A1P12109 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms