Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RNU6-1218P-201ENST00000458990 108 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN9O95484 RN7SL205P-201ENST00000490174 284 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 AC010627.1-201ENST00000503819 1294 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 AC093720.1-201ENST00000505681 714 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN9O95484 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN9O95484 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN9O95484 RN7SL176P-201ENST00000580352 264 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN9O95484 AC115286.1-201ENST00000604298 434 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 AC116447.1-201ENST00000613153 453 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN9O95484 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CLDN9O95484 RN7SL722P-201ENST00000617780 284 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 RN7SL565P-201ENST00000618246 284 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN9O95484 FP325313.1-201ENST00000638228 703 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN9O95484 OR56B2P-202ENST00000641377 2453 ntBASIC4.22□□□□□ -1.73
CLDN9O95484 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN9O95484 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN9O95484 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN9O95484 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN9O95484 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
CLDN9O95484 RAD17P1-201ENST00000418130 2042 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 AC079741.1-201ENST00000321498 212 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.21□□□□□ -1.74
CLDN9O95484 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CLDN9O95484 RNU1-94P-201ENST00000362627 173 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 ATP5F1P2-201ENST00000398143 760 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 SNORA11-201ENST00000408789 128 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 GSTM3P2-201ENST00000412746 530 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.21□□□□□ -1.74
CLDN9O95484 AC069213.2-201ENST00000420238 366 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 EIF4EP1-201ENST00000422311 642 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 EIF1P3-201ENST00000423841 334 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.21□□□□□ -1.74
CLDN9O95484 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.21□□□□□ -1.74
CLDN9O95484 RPS20P1-201ENST00000434853 354 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN9O95484 DHFRP3-201ENST00000455595 559 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 RNU7-27P-201ENST00000459281 62 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 RPL35AP15-201ENST00000468042 339 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 RPL21P126-201ENST00000470049 478 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 RN7SL738P-201ENST00000470264 297 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 RPL23AP72-201ENST00000492447 435 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.21□□□□□ -1.74
CLDN9O95484 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.21□□□□□ -1.74
CLDN9O95484 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 AC016550.3-201ENST00000515706 767 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 AC134698.5-201ENST00000519444 336 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 OR5BC1P-201ENST00000529327 739 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.21□□□□□ -1.74
CLDN9O95484 AP006289.1-201ENST00000538089 277 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 CR383656.6-201ENST00000550518 394 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.21□□□□□ -1.74
CLDN9O95484 MIR4330-201ENST00000579077 105 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.21□□□□□ -1.74
CLDN9O95484 ELOCP28-201ENST00000590044 317 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.21□□□□□ -1.74
CLDN9O95484 uc_338.9-201ENST00000617424 182 ntBASIC4.21□□□□□ -1.74
CLDN9O95484 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.21□□□□□ -1.74
CLDN9O95484 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CLDN9O95484 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
CLDN9O95484 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN9O95484 AC010300.1-201ENST00000600671 5134 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CLDN9O95484 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CLDN9O95484 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.2□□□□□ -1.74
CLDN9O95484 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLDN9O95484 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.2□□□□□ -1.74
CLDN9O95484 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.2□□□□□ -1.74
CLDN9O95484 AC091046.3-201ENST00000631455 1574 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLDN9O95484 AC008033.1-201ENST00000216407 1162 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 RNA5SP28-201ENST00000363841 119 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 RNA5SP505-201ENST00000364748 108 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 SNORD66.1-201ENST00000391230 76 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 AC097374.1-203ENST00000400783 485 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 RAB28P1-201ENST00000411517 641 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 AL512504.1-201ENST00000415494 778 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLDN9O95484 AL139095.3-201ENST00000419672 1203 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.2□□□□□ -1.74
CLDN9O95484 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.2□□□□□ -1.74
CLDN9O95484 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.2□□□□□ -1.74
CLDN9O95484 RPL12P46-201ENST00000436610 195 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 MTCYBP12-201ENST00000440559 1134 ntBASIC4.2□□□□□ -1.74
CLDN9O95484 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.2□□□□□ -1.74
CLDN9O95484 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms